UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             Washington, D.C. 20549

                                   FORM 10-KSB

|X| ANNUAL REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT
                                     OF 1934

                  For the Fiscal Year Ended September 30, 2006

|_| TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE
                                  ACT OF 1934

                 For the Transition Period From _____ to _____

                      Commission File Number 002-90539

                          APPLIED DNA SCIENCES, INC.
      (Exact name of small business issuer as specified in its charter)

                   Nevada                               59-2262718
      (State or other jurisdiction of                (I.R.S. Employer
       incorporation or organization)             Identification Number)

     25 Health Sciences Drive, Suite 113
            Stony Brook, New York              11790            (631) 444-6862
            ---------------------              -----            --------------
(Address of principal executive office)    (Postal Code)     (Issuer's telephone
                                                                   number)

      Securities registered under Section 12(b) of the Exchange Act: None

      Securities registered under Section 12(g) of the Exchange Act: None

Check whether the issuer is not required to file reports  pursuant to Section 13
or 15(d) of the Exchange Act [ ]

Check  whether the issuer (1) filed all reports  required to be filed by Section
13 or 15(d) of the  Exchange  Act of 1934 during the past 12 months (or for such
shorter period that the  registrant was required to file such reports),  and (2)
has been subject to such filing requirements for the past 90 days. Yes |X| No[ ]

Check if there is no disclosure of delinquent  filers in response to Item 405 of
Regulation S-B contained in this form, and no disclosure  will be contained,  to
the  best  of  registrant's   knowledge,  in  definitive  proxy  or  information
statements  incorporated  by  reference  in Part III of this Form  10-KSB or any
amendment to this Form 10-KSB. |X|

Indicate by checkmark  whether the  registrant is a shell company (as defined by
Rule 12b-2 of the Exchange Act).
Yes [ ] No |X|

State issuer's revenues for its most recent fiscal year. $18,900.

The aggregate  market value of the voting and  non-voting  common equity held by
non-affiliates  was $10.6  million,  as computed by  reference  to the last sale
price of the Company's  Common Stock,  as reported by the OTC Bulletin Board, on
January 11, 2007.

As of December  29,  2006,  the Company had  outstanding  121,162,385  shares of
Common Stock.





                          APPLIED DNA SCIENCES, INC.
                                FORM 10-KSB
               For the Fiscal Year Ended September 30, 2006

   Part I                                                                   Page

   Item 1.   Description of Business.                                         3

   Item 2.   Description of Property.                                        15

   Item 3.   Legal Proceedings.                                              15

   Item 4.   Submission of Matters to a Vote of Security Holders.            16

   Part II                                                                  Page

   Item 5.   Market for Common Equity and Related Stockholder Matters.       16

   Item 6.   Management's Discussion and Analysis or Plan of Operation.      17

   Item 7.   Financial Statements                                            32

   Item 8.   Changes In and Disagreements With Accountants on Accounting
             and Financial Disclosure.                                       33

   Item 8A.  Controls and Procedures.                                        33

   Item 8B.  Other Information.                                              33

   Part III                                                                 Page

   Item 9.   Directors, Executive Officers, Promoters and Control Persons;
             Compliance with Section 16(a) of the Exchange Act.              34

   Item 10.  Executive Compensation.                                         36

   Item 11.  Security Ownership of Certain Beneficial Owners and Management
             and Related Stockholder Matters                                 37

   Item 12.  Certain Relationships and Related Transactions.                 40

   Item 13.  Exhibits.                                                       41

   Item 14.  Principal Accountant Fees and Services.                         44


Signatures.                                                                  45

                                       2





                                    PART I

Forward-looking Information

         This Annual  Report on Form  10-KSB  (including  the section  regarding
Management's  Discussion  and  Analysis of  Financial  Condition  and Results of
Operations)  contains  forward-looking  statements within the meaning of Section
21E of the  Securities  Exchange Act of 1934, as amended,  including  statements
using  terminology  such as "can",  "may",  "believe",  "designated to", "will",
"expect", "plan",  "anticipate",  "estimate",  "potential" or "continue", or the
negative  thereof or other  comparable  terminology  regarding  beliefs,  plans,
expectations or intentions regarding the future. You should read statements that
contain these words carefully because they:

         o        discuss our future expectations;
         o        contain projections of our future results of  operations or of
                  our financial condition; and
         o        state other "forward-looking" information.

         We believe it is important to communicate  our  expectations.  However,
forward  looking  statements  involve  risks and  uncertainties  and our  actual
results and the timing of certain  events  could  differ  materially  from those
discussed  in  forward-looking  statements  as  a  result  of  certain  factors,
including those set forth under "Risk Factors," "Business" and elsewhere in this
prospectus.  All  forward-looking  statements and risk factors  included in this
document are made as of the date hereof, based on information available to us as
of the date thereof,  and we assume no obligations to update any forward-looking
statement or risk factor, unless we are required to do so by law.

         We are  subject to the  informational  requirements  of the  Securities
Exchange  Act of 1934,  as amended,  which  requires us to file  reports,  proxy
statements and other  information  with the  Securities and Exchange  Commission
("SEC").  Such reports,  proxy statements and other information may be inspected
at public  reference  facilities of the SEC at 100 F Street,  N.E.,  Washington,
D.C.  20549.  Copies of such material can be obtained from the Public  Reference
Section of the SEC at 100 F Street, N.E.,  Washington,  D.C. 20549 at prescribed
rates.  Because  we file  documents  electronically  with the SEC,  you may also
obtain  this   information   by  visiting  the   Securities   SEC's  website  at
http://www.sec.gov.

ITEM 1. DESCRIPTION OF BUSINESS.

Corporate History

         We are a Nevada corporation,  which was initially formed under the laws
of the  State  of  Florida  as  Datalink  Systems,  Inc.  in 1983.  In 1998,  we
reincorporated  in Nevada,  and in November of 2002,  we changed our name to our
current  name,  Applied  DNA  Sciences,  Inc. In November  2005,  our  corporate
headquarters were relocated from Los Angeles, California to the Long Island High
Technology  Incubator at Stony Brook  University in Stony Brook,  New York. This
relocation  was part of our  restructuring  effort during the fourth  quarter of
2005 to  transform  the company  from the  developmental  stage to an  operating
business.  During  this  period  and in the  first  two  quarters  of  2006,  we
established  laboratories  for  the  manufacture  of  DNA  markers  and  product
prototypes,  and DNA  authentication.  To date,  the company has a very  limited
operating  history,  and as a result,  the  company's  operations  have produced
insignificant revenues. On May 9, 2006, we entered into, and on July 25, 2006 we
announced the performance of our first SigNature Program contract.

Overview

         We provide  botanical  DNA  encryption,  embedment  and  authentication
solutions  that can help  protect  companies,  governments  and  consumers  from
counterfeiting,   fraud,   piracy,   product  diversion,   identity  theft,  and
unauthorized  intrusion  into physical  locations and  databases.  Our SigNature
Program provides a secure,  accurate and cost-effective  means for our potential
customers  to  incorporate  our  SigNature  DNA Markers in, and then quickly and
reliably  authenticate and identify,  a broad range of items such as artwork and
collectibles,   fine  wine,   consumer   products,   digital  media,   financial
instruments,  identity cards and other official documents. Having the ability to
reliably  authenticate and identify  counterfeit  versions of such items enables
companies   and   governments   to  detect,   deter,   interdict  and  prosecute
counterfeiting enterprises and individuals.

         Our   SigNature    Program    enables   our   potential    clients   to
cost-effectively:

         o        give  assurance  to  manufacturers,  suppliers,  distributors,
                  retailers and end-users that their products are authentic  and
                  can be forensically authenticated;
         o        integrate our  SigNature  DNA Markers with  existing  security
                  solutions  such as barcodes,  radio  frequency  identification
                  (RFID)  tags,  holograms,   microchips  and  other  securities
                  measures; and
         o        add value to the "bottom-line" by helping to diminish  product
                  diversion and counterfeiting.

                                       3





         Counterfeit  and diverted  products  continue to pose a significant and
growing  problem  with  consumer  packaged  goods,  especially  for prestige and
established  brands worldwide.  Piracy,  identity theft and forged documents and
items are also highly prevalent in vertical markets such as digital media,  fine
art, luxury goods, and alcoholic beverages. Key aspects of our strategy include:

         o        continuing to improve and customize our solution to  meet  our
                  potential customers' needs;
         o        continuing to  develop  and  enhance  our  existing DNA marker
                  authentication technologies;
         o        expanding  our  customer  base both domestically and abroad by
                  targeting high volume markets; and
         o        augmenting  our   competitive   position   through   strategic
                  acquisitions and alliances.

Industry Background

         Counterfeiting, product diversion, piracy, forgery, identity theft, and
unauthorized  intrusion into physical locations and databases create significant
and  growing  problems to  companies  in a wide range of  industries  as well as
governments and individuals worldwide.  The U.S. Chamber of Commerce reported in
2006 that  counterfeiting  and piracy cost the U.S.  economy  between  $200-$250
billion per year, or an estimated  750,000 American jobs, and pose a real threat
to consumer  health and safety.  The World  Customs  Organization  and  Interpol
estimate  that annual global trade in  illegitimate  goods  increased  from $5.5
billion in 1982 to roughly $600 billion in 2004.

         Product  counterfeiting and diversion  particularly harms manufacturers
of consumer  products,  especially for prestige and established  brands, and the
consumers  who  purchase   them.   For  instance,   according  to  the  Gieschen
Consultancy's 2005 Document,  Product and Intellectual Property Security Report,
or DOPIP,  consumer products associated with worldwide  counterfeit  enforcement
arrests, charges,  convictions,  sentences and civil litigation in 2005 amounted
to around $1.5 billion. This total includes:

         o        $695 million of entertainment and software products;
         o        $283 million of clothing and accessories;
         o        $193 million of cigarettes and tobacco products;
         o        $61 million of drugs and other medical supplies;
         o        $36 million of toys and sports equipment;
         o        $35 million of electronic equipment and supplies;
         o        $12 million in perfume and cosmetics;
         o        $11 million of food and alcohol products;
         o        $11 million in jewelry and watches;
         o        $10 million of computer equipment and supplies;
         o        $123 million of other goods.

         According to this report,  the value of seizures and losses  associated
with counterfeit  documents,  products and  intellectual  property in the United
States alone was $1.29 billion in 2005.

         The artworks and collectibles markets are also particularly  vulnerable
to counterfeiting, forgery and fraud. New works are produced and then passed off
as originating from a particular artistic period or source,  authentic fragments
are pieced  together  to  simulate  an original  work,  and  existing  works are
modified in order to increase  their  purported  value.  Such phony  artwork and
collectibles  are then  often  sold with  fake or  questionable  signatures  and
"provenance," or documented ownership histories that confirm authenticity.

         Governments are increasingly  vulnerable to  counterfeiting,  terrorism
and other  security  threats at least in part because  currencies,  identity and
security cards and other official  documents can be counterfeited  with relative
ease. For instance,  the DOPIP valued 2005 seizures and losses  associated  with
counterfeit currency at around $609 billion,  and counterfeit  identification at
$124 million.  Governments must also enforce the various anti-counterfeiting and
anti-piracy regimes of their respective jurisdictions which becomes increasingly
difficult with the continued expansion of global trade.

         The digital and recording  media  industry,  including the segment that
records computer software on compact discs, has long been a victim of piracy, or
the  production  of  illegal  copies  of  genuine  media  or  software,  and the
counterfeiting  and distribution of imitation media or software.  Compact discs,
DVDs,  videotapes,  computer software and other digital and recording media that
appears  identical  to genuine  products  are sold at  substantial  discounts by
vendors at street and night markets, via mail order catalogs and on the internet
at direct retail  websites or at auction  sites.  In 2006 the Business  Software
Alliance ("BSA") reported that in 2005, the United States lost $6.9 billion as a
result of software  piracy.  The BSA also  estimated that 21 percent of software
programs in the U.S. are  unlicensed and that since January 1, 2000, the BSA has
settled  with  1,668    companies    for   a   total  of   $81,821,895.   In   a
white    paper   published   in   December   2005,  the   BSA   and   the    IDC
also    reported     that     they      found     in     a      2004       study

                                       4





that   the    world    spent    more   than $59 billion for commercial  packaged
software.  Yet, software worth over $90 billion was actually installed. In other
words,  for every two dollars  worth of  software  purchased  legitimately,  one
dollar was obtained illegally.

         The  pharmaceutical  industry  also faces  major  problems  relative to
counterfeit,  diluted,  or falsely  labeled  drugs  that make their way  through
healthcare systems worldwide, posing a health threat to patients and a financial
threat to drugmakers  and  distributors.  In 2006 the Center for Medicine in the
Public  Interest  predicted that  counterfeit  drug sales will reach $75 billion
globally in 2010, an increase of more than 90% from 2005. In February, 2006, the
World Health Organization  ("WHO") estimated that counterfeits  account for more
than 10% of the global pharmaceuticals  market, 25% of pharmaceuticals  consumed
in developing  countries and as much as 50% in some countries,  are counterfeit.
According  to the WHO,  counterfeiting  can apply to both  branded  and  generic
products and counterfeit  pharmaceuticals  may include products with the correct
ingredients  but fake  packaging,  with the wrong  ingredients,  without  active
ingredients or with insufficient active ingredients. The challenges presented by
traditional counterfeiters have recently been supplemented by the many websites,
from direct  retailers to auction  sites,  that offer  counterfeit  prescription
drugs  online.  As a result,  the  pharmaceutical  industry and  regulators  are
examining  emerging  anti-counterfeit  technologies,  including  radio-frequency
identification  tags and electronic  product codes,  known as EPCs, to help stem
the  wave  of  counterfeit   drugs  and  better  track   legitimate  drugs  from
manufacturing through the supply chain.

         As more and more  companies in each of these  markets  begin to address
the problem of counterfeiting,  we expect that different systems will compete to
be the leading  standards by which products can be tracked across world markets.
Historically,  counterfeiting,  product  diversion and other types of fraud have
been combated by embedding  various  authentication  systems and rare and easily
distinguishable  materials into products, such as radio frequency identification
(RFID) devices and banknote threads in packaging,  integrated  circuit chips and
magnetic  strips in  automatic  teller  machine  cards,  holograms  on currency,
elemental taggants in explosives,  and radioactivity and rare molecules in crude
oil. These  techniques are effective but have generally been  reverse-engineered
and  replicated  by  counterfeiters,  which limits their  usefulness as forensic
methods for authentication of the sources of products and other items.

The Applied DNA Solution

         We believe our  solution,  which we call the SigNature  Program,  is as
broadly  applicable,  convenient  and  inexpensive  as  existing  authentication
systems, while highly resistant to  reverse-engineering or replication,  so that
it can either be applied  independently or supplement  existing systems in order
to allow for a forensic level of  authentication of the sources of a broad range
of items,  such as  artwork  and  collectibles,  fine wine,  consumer  products,
digital and recording media,  pharmaceuticals,  financial instruments,  identity
cards and official  documents.  The SigNature  Program first involves our design
and manufacture of a highly  customized and encrypted  botanical DNA marker,  or
SigNature  DNA  Marker.  The  SigNature  DNA  Marker  is then  encapsulated  and
stabilized so that it is resistant to heat, organic solvents, chemicals and most
importantly,  ultraviolet,  or UV radiation. Once it has been encapsulated,  our
SigNature  DNA  Embedment  system can be used to embed the  SigNature DNA Marker
directly onto  products or other items or into special  inks,  threads and other
media, which in turn can be incorporated into packaging or products.  Once it is
embedded,  our SigNature  DNA  Encryption  Detector pen can  instantly  show the
presence  or absence of any of our  SigNature  DNA  Markers,  and our  SigNature
polymerase   chain   reaction  (PCR)  Kits  can  provide  rapid  forensic  level
authentication of specific SigNature DNA Markers.

         We believe that the key  characteristics  and benefits of the SigNature
Program are as follows:

We Believe Our SigNature DNA Markers Are Virtually Impossible to Copy

         In creating unique SigNature DNA Markers,  we use DNA segments from one
or more botanical sources,  rearrange them into unique encrypted sequences,  and
then implement one or more layers of  anti-counterfeit  techniques.  Because the
portion of DNA in a  SigNature  DNA  Marker  used to  identify  the marker is so
minute, it cannot be detected unless it is replicated billions of times over, or
amplified.  This amplification can only be achieved by applying matching strands
of DNA,  or a primer,  and PCR  techniques  to the  SigNature  DNA  Marker.  The
sequence of the relevant DNA in a SigNature DNA Marker must be known in order to
manufacture the primer for that DNA. As a result, we believe the effort required
to find,  amplify,  select and clone the relevant DNA in a SigNature  DNA Marker
would  involve such enormous  effort and expense that  SigNature DNA Markers are
virtually impossible to copy without our proprietary systems.

Simple and Rapid Authentication

         With our  advanced  SigNature  DNA  Marker  detection  devices  and PCR
testing kits, any of our customers can quickly complete an on-site verification.
When   our  SigNature  DNA    Encryption    Detector    pen  comes  in   contact

                                       5





with  our  proprietary overt ink on a label or product  package,  a  biochemical
reaction triggers a reversible  color change from blue to pink and back to blue.
Testing  of  this   color  change  can  be repeated  between 30 to 50 times. For
forensic  level   authentication,  our  SigNature  PCR  testing kits can produce
absolute authentication in less than 30 minutes using portable PCR machines.

Low Cost and High Accuracy

         The costs associated with the DNA required to manufacture our SigNature
DNA Markers are not significant since the amount of DNA required for each marker
is so minute (for instance,  only 3-5 parts per million when  incorporated in an
ink). We manufacture  the  identifying  segment of DNA to be used in a SigNature
DNA Marker by cloning  them  inside  microorganisms  such as yeast or  bacteria,
which are highly productive and inexpensive to grow. As a result,  SigNature DNA
Markers are relatively  inexpensive  when compared to other  anti-counterfeiting
devices such as RFIDs,  EPCs,  integrated  circuit  chips,  and  holograms.  Our
SigNature DNA Encryption Detectors,  which use color changing dyes and molecular
"triggers"  to  instantly  detect  SigNature  DNA Markers,  are also  relatively
inexpensive.  At the same time,  the  probability  of  mistakenly  identifying a
SigNature DNA Marker is less than 1 in 1 trillion, so our authentication systems
are highly  accurate,  and in fact, our SigNature PCR Kits can authenticate to a
forensic level.

Easily Integrated with Other Anti-Counterfeit Technologies

         Our DNA Markers can be embedded  onto RFID devices,  banknote  threads,
labels, serial numbers, holograms, and other marking systems using inks, threads
and other media. We believe that combined with other  traditional  methods,  our
SigNature  Program  provides a  significant  deterrent  against  counterfeiting,
product diversion, piracy, fraud and identity theft.

Broad Applicability and Ingestible

         Our  SigNature  DNA Markers can be  embedded  into almost any  consumer
product, and virtually any other item. For instance, the indelible SigNature DNA
Ink we produce is safe to consume and can be used in pharmaceutical drug tablets
and capsules.  Use of our  SigNature  DNA in ingestible  products and drugs will
require FDA approval.  We have initiated a strategy to approach FDA in the first
quarter of calendar year 2007.

Our Strategy

         We expect to generate revenues  principally from sales of our SigNature
Program. Key aspects of our strategy include:

Customize and Refine the SigNature Program to Meet Potential Customers' Needs

         We are  continuously  attempting  to improve our  SigNature  Program by
testing the incorporation of our DNA Markers into different media, such as newly
configured labels, inks or packing elements,  for use in new applications.  Each
prospective  customer has specific needs and employs  varying levels of existing
security technologies with which our solution must be integrated. Our goal is to
develop a secure and cost-effective  system for each potential customer that can
be incorporated into that potential  customer's  products or items themselves or
their packaging so that they can, for instance, be tracked throughout the entire
supply chain and distribution system.

Continue to Enhance Detection Technologies for Authentication of  our  SigNature
DNA Markers

         We have also  identified  and are further  examining  opportunities  to
collaborate  with companies and  universities to develop a new line of detection
technologies  that will provide faster and more  convenient ways to authenticate
our SigNature DNA Markers.

Target Potential High-Volume Markets

         We will continue to focus our efforts on target  vertical  markets that
are  characterized by a high level of vulnerability to  counterfeiting,  product
diversion,  piracy,  fraud,  identity  theft,  and  unauthorized  intrusion into
physical  locations  and  databases.  Today our target  markets  include art and
collectibles,  fine  wine,  consumer  products,  digital  and  recording  media,
pharmaceuticals,  and  homeland  security.  If and  when we  have  significantly
penetrated  these  markets,  we intend to expand into  additional  related  high
volume markets.

Pursue Strategic Acquisitions and Alliances

         We  intend  to  pursue   strategic   acquisitions   of  companies   and
technologies that strengthen and complement our core  technologies,  improve our
competitive  positioning,  allow  us to  penetrate  new  markets,  and  grow our
customer base. We also intend to work in collaboration with our licensee Biowell
and  potential  strategic  partners  in order to continue to market and sell new
product lines derived from, but not limited to, DNA technology.

                                       6





Target Markets

         A licensee of our  products,  Biowell,  has  incorporated  DNA markers,
based upon the same  technology we use to create our  SigNature DNA Markers,  in
more than 1 billion consumer products including DVDs, CDs, fine art,  cosmetics,
luxury teas and rice wine,  seafood and many other items distributed in Asia. We
have just begun  offering  our  products  and  services in Europe and the United
States and are targeting the following six principal markets:

Art & Collectibles

         The fine art and collectibles  markets are  particularly  vulnerable to
counterfeiting,  forgeries and fraud.  Phony artwork and  collectibles are often
sold with fake or  questionable  signatures  or  attributions.  We  believe  our
SigNature DNA Markers can safely be embedded  directly in, and so can be used to
designate and then authenticate all forms of artwork and collectibles, including
paintings, books, porcelain,  marble, stone, bronzes, tapestries, glass and fine
woodwork, including frames. They can also be embedded in any original supporting
documentation related to the artwork or collectible, the signature of the artist
and any other relevant material that would provide provenance, such as:

         o        A   signed  certificate   or  statement of authenticity from a
                  respected authority or expert on the artist;
         o        An   exhibition  or  gallery  sticker  attached  to the art or
                  collectible;
         o        An original sales receipt;
         o        A  film  or  recording  of the artist talking about the art or
                  collectible;
         o        An appraisal from a recognized authority or expert on the  art
                  or collectible; and
         o        Letters  or  papers  from  recognized  experts  or authorities
                  discussing the art or collectible.

Fine Wine

         Vintners   and   purveyors  of  fine  wine  are  also   vulnerable   to
counterfeiting  or product  diversion.  We believe  our  SigNature  Program  can
provide vintners and purveyors of fine wines several benefits:

         o        Verifed authenticity increases potential customers' confidence
                  in the product and their purchase decision;
         o        For the vintner,  the SigNature  Program can strengthen  brand
                  support and recognition, and offers the potential for improved
                  marketability and sales; and,
         o        SigNature DNA Markers can be embedded in bottles,  labels,  or
                  both at the winery,  and easily  authenticated at the location
                  of the wine distributor or auctioneer.

Consumer Products

         Counterfeit  items are a significant and growing problem with all kinds
of consumer  packaged  goods,  especially in the retail and apparel  industries.
According  to  the  2005  DOPIP,  up to  $283  million  worth  of  clothing  and
accessories  worldwide are fake, as well as $12 million worth of fragrances  and
cosmetics are counterfeit each year. In the United States, $1.29 billion dollars
worth of seizures and losses were incurred resulting from counterfeit of apparel
and other consumer  products.  We have  developed and are currently  marketing a
number of solutions aimed at brand protection and  authentication for the retail
and apparel  industries,  including the clothing,  accessories,  fragrances  and
cosmetics segments.  Our SigNature Program can be used by manufacturers in these
industries  to combat  counterfeiting  and  piracy  of  primary,  secondary  and
tertiary  packaging,  as well as the product itself,  and to track products that
have been lost in transit, whether misplaced or stolen.

Digital and Recording Media

         The digital and recording  media  industry,  including the segment that
records  computer  software on compact  discs,  faces  significant  threats from
piracy and the  counterfeiting  and distribution of imitation media or software.
For instance,  according to the BSA, in 2005 the United States lost $6.9 billion
as a result of software  piracy.  Our SigNature DNA Markers can be embedded onto
digital and recording media products, such as CDs, DVDs, videotapes and computer
software, as well as the packaging of these products.

Pharmaceuticals

         The  pharmaceutical  industry  also faces  major  problems  relative to
counterfeit,  diluted,  or falsely  labeled  drugs  that make their way  through
healthcare systems worldwide, posing a health threat to patients and a financial
threat to drugmakers and distributors.  As a result, the pharmaceutical industry
and regulators are examining emerging anti-counterfeit  technologies,  including
RFID tags and EPCs to help stem the wave of  counterfeit  drugs and better track
legitimate drugs from manufacturing  through the supply chain. Our SigNature DNA
Markers   can   easily   be   embedded  directly into pharmaceutical   packaging
or    into    RFID     tags     or     EPCs    attached    to    packaging,  and

                                       7





since they are ingestible, may be applied as part of a unit  dose.  In its  2004
report  "Combating  Counterfeit Drugs," the Food and Drug Administration ("FDA")
noted    that    authentication   technologies   for  pharmaceuticals  (such  as
color-shifting  inks,  holograms, taggants,  or  chemical  markers  embedded  in
a drug or its  label)  have been sufficiently perfected  that they can now serve
as a  critical  component  of a layered approach to  control  counterfeit drugs.
FDA's  2004  Report  acknowledged  the   importance   of   using   one   or more
authentication  technologies  for  drug products.

Homeland Security

         Governments  worldwide  are  increasingly  faced with the  problems  of
counterfeit currencies,  official documents, and identity and security cards, as
well as terrorism and other security threats.  Governments must also enforce the
various   anti-counterfeiting   and  anti-piracy  regimes  of  their  respective
jurisdictions which becomes increasingly  difficult with the continued expansion
of global  trade.  Our  SigNature  Program can  provide  secure,  forensic,  and
cost-effective anti-counterfeiting,  anti-piracy and identification solutions to
local, state, and federal governments as well as the defense contractors and the
other  companies that do business with them.  Our SigNature  Program can be used
for all types of identification and official documents, such as:

         o        Passports;
         o        Lawful permanent resident, or "green" cards;
         o        Visas;
         o        Drivers' licenses;
         o        Social Security cards;
         o        Military identification cards;
         o        National transportation cards;
         o        Security  cards  for  access  to sensitive physical locations;
                  and,
         o        Other  important  identity  cards,  official  documents    and
                  security-related cards.

Our Technology

         Every  living  organism  has a unique  DNA  code  that  determines  the
character and  composition of its cells.  The core  technologies of our business
allow us to use the DNA of everyday  plants to mark  objects in a unique  manner
that we believe can only be replicated at great expense, and then identify these
objects by detecting the absence or presence of the DNA.

SigNature DNA Encryption

         Our patent pending  encryption  system allows us to isolate  strands of
botanical  DNA and then  fragment  and  reconstitute  them to form  unique  "DNA
chimers", or encrypted DNA segments, whose sequences are known only to us.

SigNature DNA Encapsulation

         Our  patented  encapsulation  system  allows  us to apply a  protective
coating to  encrypted  DNA  chimers,  creating a  SigNature  DNA Marker  that is
resistant to heat, organic solvents,  chemicals and UV radiation,  and so can be
identified  for hundreds of years after being embedded  directly,  or into media
applied or attached to the item to be marked.

SigNature DNA Embedment

         Our patented  embedment  system allows us to incorporate  our SigNature
DNA Markers  into a broad  variety of media,  such as  petroleum  and  petroleum
derivatives, inks, dyes, laminates, glues, threads, and textiles.

SigNature DNA Authentication

         Our patent pending  forensic level  authentication  methods allow us to
unlock the encrypted DNA chimers by using PCR techniques and proprietary primers
that were  specifically  designed by us to detect the DNA sequences we encrypted
and embedded into the product or other item. Detection of the DNA chimers unique
to a particular item or series of items allows us to  authenticate  its or their
origin.

Products And Services

         Our   SigNature   Program   consists  of  three  steps:   creating  and
encapsulating  a specific  encrypted  DNA  segment,  applying it to a product or
other item,  and detecting the presence or absence of the specific  segment.  We
plan for the first two steps to be controlled exclusively by Applied DNA and its
certified agents to ensure the security of SigNature DNA Markers.  Once applied,
the  presence  of any of our  SigNature  DNA  Markers can be detected by us or a
customer   in   a   simple   spot   test,   or   a   sample   taken   from   the
product        or          other              item          can    be   analyzed

                                       8





forensically to obtain definitive proof of the presence or absence of a specific
type of SigNature DNA Marker (e.g.  one designed to mark a particular product).

Creating a Customer or Product-Specific SigNature DNA Marker

         Our  SigNature   DNA  Markers  are   botanical   DNA  segments   custom
manufactured by us to identify a particular  class of or individual  products or
items.  During this manufacturing  process,  we scramble and encrypt a naturally
occurring  botanical  DNA code segment or  segments,  and then  encapsulate  the
resulting DNA segment  utilizing  our  proprietary  SigNature DNA  Encapsulation
system.  We then  record and store the  sequence  of the DNA segment in a secure
database in order that we can later detect it.

Embedding the SigNature DNA Marker

         Our SigNature DNA Markers may be directly embedded in products or other
items,  or otherwise  attached by embedding them into media that is incorporated
in or attached to the product or item. For example,  we can embed  SigNature DNA
Markers directly in paper, metal, plastics, stone, ceramic, and other materials.
Media in which we can embed SigNature DNA Markers include:

         SigNature DNA Ink: Our SigNature DNA Ink can be applied  directly or on
a label that is then affixed to the product or item. SigNature DNA Ink is highly
durable and degradation resistant. SigNature DNA Ink can be visible (colored) or
invisible.  This makes it possible to mark  products  with a visible,  or overt,
and/or invisible,  or covert,  SigNature DNA Marker on any tangible surface such
as a label.  The  location  of covert  Signature  DNA  Markers on a product  are
recorded and stored in a secure database.  Similar media like varnish and paints
can also be used instead of ink. Examples of products and other items onto which
SigNature DNA Ink can be applied include:

         o        Artwork  and  Collectibles:  paintings,  artifacts,  antiques,
                  stamps, coins, documents, collectibles and memorabilia;
         o        Corporate  documents:  confidential,  date  and time dependent
                  documents or security clearance documents;
         o        Financial  services:  currency,  stock  certificates,  checks,
                  bonds and debentures;
         o        Retail:    event   tickets,  VIP  tickets,   clothing  labels,
                  luxury products;
         o        Pharmaceuticals:   tablet, capsule and pill surface  printing;
                  and,
         o        Miscellaneous:   lottery   tickets, inspection  stamps, custom
                  seals, passports and visas, etc.

         SigNature DNA Thread:  Our  SigNature DNA Thread,  which can consist of
any fabric from cotton to wool, is embedded  with  SigNature DNA Markers and can
be used  to  mark  and  authenticate  products  and  other  items  incorporating
textiles.  For example,  SigNature DNA Thread can be  incorporated in a finished
garment,  bag,  purse,  shoe or other product or item.  SigNature DNA Thread can
help textile  vendors,  clothing and  accessory  manufacturers  and  governments
authenticate thread, yarn and fabric at any stage in the supply chain.

         Other Security Devices:  Our SigNature DNA Markers can also be embedded
onto printed barcodes, RFID tags, optical memory strips, holograms, tamper proof
labels and other security devices incorporated into products and other items for
various security-related purposes.

SigNature DNA Detection and Product Authentication

         Level 1 "Spot Test"  Detection:  Our SigNature DNA Encryption  Detector
pens, which are custom manufactured to identify our SigNature DNA Markers, allow
us or our  customers  to determine  the presence or absence of these  markers in
around one second when they have been  embedded in a special overt DNA Ink. When
the SigNature DNA Encryption Detector is swiped over matching overt DNA Ink, the
color of the ink temporarily changes from blue to pink,  indicating the presence
of the markers,  and validating the product or other item. Though this detection
process cannot  distinguish  between  different  types of SigNature DNA Markers,
such as markers we have designed for one customer or product versus another,  it
allows for instant sampling at any point in the supply chain.

         Level 2 Forensic DNA Authentication: Our SigNature PCR Kits allow us or
our  customers  to use a sample  taken  from  the  product  or other  item to be
authenticated,  and using our proprietary primers and PCR technology,  determine
the sequences of DNA included in the sample,  and conclude whether it includes a
specific SigNature DNA Marker. This more elaborate test generally requires about
30 minutes to complete.  This authentication process provides absolute certainty
about the presence or absence of specific types of a SigNature DNA Marker.

                                       9





Sales and Marketing

         We have  since  inception  only had  sales of our  products  in  Europe
through direct sales. As of January 16, 2007, we had 2 employees  devoted to and
3  employees  engaged  in  direct  sales.  We expect  to hire  additional  sales
directors and/or  consultants to assist us with sales and marketing efforts with
respect to our 6 target vertical markets.

Research and Development

         From June 1, 2005 to September 20, 2005, we retained the Idaho National
Laboratory  ("INL"),  which is managed and operated by Battelle  Energy Alliance
LLC for the Department of Energy,  for the purpose of  independently  validating
our  SigNature  DNA  Encryption,  Encapsulation,  Embedment  and  Authentication
technologies.  Currently  our research  and  development  efforts are  primarily
focused on the  development  of prototypes of new versions of our products using
our existing technologies for review by prospective customers, such as different
types of SigNature  DNA Ink and SigNature  DNA Thread.  Nonetheless,  we believe
that our development of new and enhanced  technologies  relating to our business
may be  important  to our future  success,  and we continue  to examine  whether
investments in the research and development of such technologies is merited.

Manufacturing

         We have the capability to manufacture SigNature DNA Markers, covert DNA
Ink, and SigNature  PCR Kits at our  laboratories  in Stony Brook.  We rely upon
Biowell to manufacture  our overt  color-changing  DNA Ink and our SigNature DNA
Encryption Detector pens.

Competition

         The  principal   markets  for  our  SigNature   Program  are  intensely
competitive.  We  compete  with  many  existing  suppliers  and new  competitors
continue to enter the market. Many of our competitors, both in the United States
and elsewhere,  are major pharmaceutical,  chemical and biotechnology companies,
or have  strategic  alliances  with  such  companies,  and  many  of  them  have
substantially  greater capital  resources,  marketing  experience,  research and
development  staff,  and  facilities  than we do. Any of these  companies  could
succeed in developing products that are more effective than the products that we
have or may  develop  and  may be  more  successful  than  us in  producing  and
marketing their existing  products.  Some of our competitors that operate in the
anti-counterfeiting  and  fraud  prevention  markets  include:  Applied  Optical
Technologies,  Authentix, ChemTAG, Collectors Universe Inc., Collotype, Data Dot
Technology,  Digimarc  Corp.,  DNA  Technologies,  Inc.,  Informium AG,  Inksure
Technologies,  L-1 Identity Solutions,  Manakoa,  SmartWater  Technology,  Inc.,
SureTrace , Tracetag and Warnex.


         Some examples of competing security products include:

         o        Fingerprint scanner: a system that scans fingerprints   before
                  granting access to secure information or facilities;
         o        Voice recognition software: software that authenticates  users
                  based on individual vocal patterns;
         o        Cornea scanner: a scanner that scan the iris of  a  user's eye
                  to compare with data in a computer database;
         o        Face scanner: a scanning system that use complex algorithms to
                  distinguish one face from another;
         o        Integrated circuit chip & magnetic strips:  integrated circuit
                  chips that receive and, if authentic,  send a correct electric
                  signal back to the reader,  and  magnetic  strips that contain
                  information,  both of which are common components of debit and
                  credit cards;
         o        Optically variable  microstructures:  these include holograms,
                  which  display  images in three  dimensions  and are generally
                  difficult to reproduce using advanced color  photocopiers  and
                  printing  techniques,  along with other  devices  with similar
                  features;
         o        Elemental  Taggants and Fluorescence:  elemental  taggants are
                  various  unique  substances  that can be used to mark products
                  and other  items,  are  revealed by  techniques  such as x-ray
                  fluorescence; and,
         o        Radioactivity & Rare Molecules: radioactive substances or rare
                  molecules which are uncommon and readily detected.

         We expect  competition  with our  products and services to continue and
intensify in the future.  We believe  competition  in our  principal  markets is
primarily driven by:

         o        product performance, features and liability;
         o        price;
         o        timing of product introductions;

                                       10





         o        ability to develop, maintain and protect proprietary  products
                  and technologies;
         o        sales and distribution capabilities;
         o        technical support and service;
         o        brand loyalty;
         o        applications support; and
         o        breadth of product line.

         If  a  competitor   develops  superior   technology  or  cost-effective
alternatives to our products,  our business,  financial condition and results of
operations could be significantly harmed.

PROPRIETARY RIGHTS

         We  believe  that our 7  patents,  14  patents  pending,  2  registered
trademarks,  and 2 registered  trademarks  pending,  which are  described in the
table  below,   and  our  trademarks,   trade  secrets,   copyrights  and  other
intellectual property rights are important assets for us.

Patents Issued:




          Patent Name                       Patent No:            Assignee of Record          Dated Issued        Jurisdiction
                                                                                                      
Nucleic Acid as Marker for Product          89108443              APDN (B.V.I.) Inc.          March 17,2000       Taiwan
Anticounterfeiting and Identification

Method of using ribonucleic acid as         00107580.2            Rixflex Holdings            February 2, 2005    China
product antifake mark and for verification                        Limited (2)

EppenLocker (A Leakage-Prevention           89204158              APDN (B.V.I.) Inc.          March 10, 2000      Taiwan
Apparatus of Microcentrifuge)

Multiple Tube Structure for Multiple PCR    89210575              APDN (B.V.I.) Inc.          June 20, 2000       Taiwan
in a Closed Container

A Device for Multiple Polymerase Chain      89111477              APDN (B.V.I.) Inc.          June 12, 2000       Taiwan
Reactions In a Closed Container and a
Method of Using Thereof

Method for Mixing Nucleic Acid in Water     921221973             APDN (B.V.I.) Inc.          August 11, 2003     Taiwan
Insoluble Media and Application Thereof

A Method of Utilizing Nucleic Acids as      US 7,115,301 B2       Rixflex Holdings Limited    October 3, 2006     United States
Markers for Product Anti-Counterfeit                              (2)
Labeling and Verification


         Patents Pending:




          Patent Name                     Application No.       Filed in the Name of          Dated Filed         Jurisdiction
                                                                                                      
Method for Mixing Nucleic Acid in Water   2002-294229           Biowell (1)                   August 31, 2002     Japan
Insoluble Media and Application Thereof
                                          03007023.9            Rixflex Holdings              March 27, 2003      EU
                                                                Limited (2)

                                          10/645,602            Rixflex Holdings              August 22, 2003     United States
                                                                Limited (2)


Method of dissolving nucleic acid in      03155949.2            Rixflex Holdings              August 27, 2003     China
water insoluble medium and its application                      Limited (2)

Novel nucleic acid based steganography    10/909,431            Rixflex Holdings              August 3, 2004      United States
system and application thereof                                  Limited (2)
Patent Name


                                       11







                                                                                                      
thereof

Cryptic method of secret information      921221490             APDN (B.V.I.) Inc.            August 6, 2003      Taiwan
carried in DNA molecule and it
deencryption method



A novel nucleic acid based steganography  03127517.6            Biowell (1)                   August 6, 2003      China
system and application thereof
                                          61387/2004            Rixflex Holdings              August 4, 2004      Korea
                                                                Limited (2)


A novel method for coding based on
nucleic acids and utility thereof         04018374.1            Rixflex Holdings              August 3, 2004      EU
                                                                Limited (2)

                                          1-2004-00742          Rixflex Holdings              August 4, 2004      Vietnam
                                                                Limited (2)

A novel nucleic acid based steganography
system and applications thereof           092819                Rixflex Holdings              August 4, 2004      Thailand
                                                                Limited (2)

                                          PI20043145            Biowell (1)                   August 4, 2004      Malaysia

                                          2004-225987           Rixflex Holdings              August 2, 2004      Japan
                                                                Limited (2)

                                          P-00200400374         Rixflex Holdings              August 4, 2004      Indonesia
                                                                Limited (2)

                                          764/CHE/2004          Rixflex Holdings              August 4, 2004      India
                                                                Limited (2)

Method for classifying group ID of        92119302              APDN (B.V.I.) Inc.            July 15, 2003       Taiwan
shoppers and transferring the shopping
discount to group development funds
development

Method For transferring feedback          03150071.4            Rixflex Holdings              July 31, 2003       China
foundation capable of identifying                               Limited (2)
multiple objects



Method of Classifying Group ID of         PI20042889            Rixflex Holdings              August 4, 2004      Malaysia
Shoppers and Transferring the Shopping                          Limited (2)
Discount to Group Development Funds
                                          092217                Rixflex Holdings              July 12, 2004       Thailand
                                                                Limited (2)

                                          2004-200730           Biowell (1)                   July 7, 2004        Japan

System and Method for authenticating      11/437,265            APDN (B.V.I.) Inc.            May 19, 2005        US
multiple components associated with a
particular product.                       PCT/US2006/019660     APDN (B.V.I.) Inc.            May 19, 2006        PCT


                                       12








                                                                                                      
System and Method for Marking Textiles    10/825,968            APDN (B.V.I.) Inc.            April 15, 2004      US
with Nucleic Acid

Method for Transferring                   92119302              APDN (B.V.I.) Inc.            July 15, 2003       Taiwan
Feedback-Foundation capable of
identifying multiple objects              03150071.4            Rixflex                       July 31, 2003       China
                                                                Holdings Limited(2)




         (1) All  patents  in  the name  of and patent applications filed in the
         name of Biowell have been assigned to our  wholly-owned subsidiary APDN
         (B.V.I.) Inc., and we are making efforts to ensure APDN (B.V.I.) is the
         assignee or filer of record, as the case may be.

         (2) All  patents  in  the name  of and patent applications filed in the
         name of  Rixflex Holdings Limited, which merged into APDN (B.V.I.) Inc.
         on July 12, 2005, have been assigned to APDN (B.V.I.) Inc.,  and we are
         making  efforts to ensure APDN (B.V.I.) is the  assignee  or  filer  of
         record, as the case may be.

         Trademarks Issued:





         Trademark                         Registration No:         Registered Owner           Registration Date     Jurisdiction
                                                                                                         
APPLIED DNA and model molecule design      846354                   Applied DNA Sciences       August 13, 2004       Mexico
                                                                    Inc.

APPLIED DNA and model molecule design      846711                   Applied DNA Sciences Inc.  August 16, 2004       Mexico

APPLIED DNA and model molecule design      3392818                  Applied DNA Sciences Inc.  March 21, 2005        European
                                                                                                                     Community

BIOWELL and Design                         3,155,578                Rixflex Holdings           October 17, 2006      United States
                                                                    Limited (1)

BIOWELL and Design                         2,675,941                Rixflex Holdings           January 21, 2003      United States
                                                                    Limited (1)

BIOWELL and Design                         2,611,291                Rixflex Holdings           August 27, 2002       United States
                                                                    Limited (1)

BIOWELL and Design                         4101159010000            Biowell (2)                May 4, 2005           South Korea

BIOWELL and Design                         4,819,252                Rixflex Holdings           November 19, 2004     Japan
                                                                    Limited (1)


         (1) All registered  trademarks in the name of Rixflex Holdings  Limited
         have been assigned to APDN (B.V.I.) Inc., and we are making efforts  to
         ensure  APDN (B.V.I.) Inc. is the registered owner.

         (2) All registered trademarks in the name of Biowell have been assigned
         to  APDN  (B.V.I.)  Inc.,  and  we  are  making  efforts to ensure APDN
         (B.V.I.) Inc. is the registered owner.

         Trademarks Pending:





         Trademark                         Application No:          Owner                      Filing Date           Jurisdiction
                                                                                                         
APPLIED DNA                                76/549,861               APDN (B.V.I.) Inc.         September 22, 2003    United States

SIGNATURE                                  78/871,967               APDN (B.V.I.) Inc.         April 28, 2006        United States


         However,  there are events that are outside of our control  that pose a
threat   to    our    intellectual    property    rights   as   well   as to our
products   and   services.  For    example,  effective  intellectual    property
protection                   may                not           be       available

                                       13





in    every    country    in   which our products and services are  distributed.
The  efforts  we  have  taken  to  protect  our  proprietary  rights  may not be
sufficient or effective. Any significant impairment of our intellectual property
rights  could harm our  business  or our  ability  to  compete.  Protecting  our
intellectual  property rights is costly and time consuming.  Any increase in the
unauthorized use of our intellectual property could make it more expensive to do
business  and harm our  operating  results.  Although  we seek to obtain  patent
protection  for our  innovations,  it is  possible we may not be able to protect
some of these innovations.  Given the costs of obtaining patent  protection,  we
may  choose  not to  protect  certain  innovations  that  later  turn  out to be
important.  There is always  the  possibility  that the scope of the  protection
gained from one of our issued patents will be  insufficient or deemed invalid or
unenforceable.  We also seek to maintain certain intellectual  property as trade
secrets. This secrecy could be compromised by third parties, or intentionally or
accidentally  by our  employees,  which would  cause us to lose the  competitive
advantage resulting from these trade secrets.

         Additionally,  litigation  regarding  patents  and  other  intellectual
property rights is extensive in the biotechnology  industry.  In the event of an
intellectual  property  dispute,  we may be forced to litigate.  This litigation
could involve proceedings  instituted by the U.S. Patent and Trademark Office or
the International  Trade Commission,  as well as proceedings brought directly by
affected  third  parties.  Intellectual  property  litigation  can be  extremely
expensive,  and  these  expenses,  as well  as the  consequences  should  we not
prevail,  could  seriously  harm  our  business.  If a  third  party  claims  an
intellectual  property  right to technology we use, we might need to discontinue
an important  product or product  line,  alter our products and  processes,  pay
license fees or cease our affected business activities.  Although we might under
these circumstances  attempt to obtain a license to this intellectual  property,
we may not be able to do so on favorable terms, or at all.

Strategic Alliances

Purchase of Intellectual Property and License Agreement with Biowell

         In the first half of 2005, Biowell transferred substantially all of its
intellectual  property to Rixflex  Holdings  Limited,  a British  Virgin Islands
company, and on July 12, 2005, Rixflex Holdings Limited merged with and into our
wholly-owned  subsidiary  APDN (B.V.I.) Inc., a British Virgin Islands  company.
The  shareholders of Rixflex  Holdings Limited received 36 million shares of our
common stock in consideration of this merger. In connection with the acquisition
of this Biowell intellectual  property, we terminated the license agreement that
we had previously  entered into with Biowell in October 2002, under which we had
the  exclusive  right  to  sell,   market,   and  sub-license   certain  Biowell
intellectual  property  within the United States,  the European  Union,  Canada,
Mexico,  Colombia, Saudi Arabia and the United Arab Emirates. Also in connection
with this  acquisition,  on July 12,  2005,  the Company  entered into a license
agreement with Biowell, whereby the Company granted Biowell an exclusive license
to sell, market, and sub-license certain of the Company's products in most Asian
countries and certain  Middle Eastern  countries.  The license is for an initial
term ending December 31, 2010, and if Biowell meets its performance  goals,  the
license  agreement  will  extend for an  additional  five year term.  If Biowell
sub-licenses  these products within these countries,  Biowell is required to pay
the Company 50% of all fees,  payments or  consideration or any kind received in
connection with the grant of the  sublicense.  Biowell is also required to pay a
royalty  of 10% on all net  sales  of these  products  and is  required  to meet
certain minimum annual net sales in each of the various countries covered by the
license.  We have the right to  terminate  the  exclusivity  of the license with
respect to any particular  country if Biowell fails to meet its annual net sales
requirements  for that  country  during  the  first  year  after the date of the
agreement,  and  to  terminate  the  license  altogether  with  respect  to  any
particular  country if Biowell  fails to meet its annual net sales  requirements
for that country for two  consecutive  years.  Although  Biowell has not met its
annual net sales  requirements  for any particular  country to date, we have not
yet  terminated  the  exclusivity  of the license  with  respect to any country.
Cumulative  royalties  earned from this  agreement for the period from July 2005
through  September  30, 2006  totaled  $33,722.  Until the license  agreement is
terminated, it also provides us ownership of all improvements,  modifications or
alterations  made  by  Biowell  to  the  licensed  products,   the  technologies
underlying  them,  or the mode of using them,  that are related to our business,
and   provides   Biowell  an  exclusive   license  to  any  such   improvements,
modifications or alterations made by us.

Sub-License Agreement with G.A. Corporate Finance

         In July of 2003, we, Biowell and G. A. Corporate  Finance Ltd.  entered
into a Sub-License Agreement for the United  Kingdom in exchange for $3 million.
G. A. Corporate Finance Ltd. paid $25,000 upon its execution  of  the Agreement,
and the remaining $2.975 million in the form of its interest bearing  promissory
note,  payable in twenty (20) consecutive quarterly  installments  of  principal
and interest in the amount equal to the lesser of $185,937.50  or  35%  of gross
revenues for that quarter it generated  from sales of certain of our products in
the United  Kingdom,  due on the final day of each quarter.  Due in  part to our
lack of marketable  products during the first two years after the date  of  this
agreement,  G.A. Corporate  Finance  Ltd.  has  not  generated  any revenue from

                                       14





sales of our products in the United  Kingdom, and so has never made any payments
to us under its note.  We are currently  in  negotiations  with  G.A.  Corporate
Finance Ltd. to either amend or terminate this agreement.

Employees

         Presently,  we employ a total of 7 full-time  employees and 2 part-time
employees,  including 2 in management, 3 in operations, 3 in sales and marketing
and 1 in investor  relations.  None of our  employees  are covered by collective
bargaining  agreements,  and we believe our  relations  with our  employees  are
favorable.

ITEM 2. DESCRIPTION OF PROPERTY.

         We maintain our principal  office at 25 Health  Sciences  Drive,  Suite
113,  Stony Brook,  New York 11790.  We moved our  principal  office to the Long
Island High Technology Incubator,  which is located on the campus of Stony Brook
University,  in December  2005.  We believe  that our current  office  space and
facilities  are  sufficient to meet our present needs and do not  anticipate any
difficulty  securing  alternative  or  additional  space,  as  needed,  on terms
acceptable to us.

ITEM 3. LEGAL PROCEEDINGS.

         From time to time, we may become involved in various lawsuits and legal
proceedings which arise in the ordinary course of business.  However, litigation
is subject to inherent  uncertainties,  and an adverse  result in these or other
matters  may  arise  from  time to time  that may harm our  business.  Except as
described  below, we are currently not aware of any such legal  proceedings that
we believe  will have,  individually  or in the  aggregate,  a material  adverse
affect on our business, financial condition or operating results.

Paul Reep v. Applied DNA Sciences, Inc., Case No.: BC345702

         Plaintiff Paul Reep, a former  employee,  commenced this action against
us on January 10, 2006.  Mr. Reep  asserts  eight causes of action for breach of
contract, breach of an oral agreement, negligent misrepresentation, interference
with  prospective  business  advantages,   defamation,   fraud,  accounting  and
constructive  trust, unjust enrichment.  The relief sought includes  declaratory
relief,  unspecified compensatory damages, unpaid salary,  unspecified penalties
under  the  California  Labor  Code,  interest,  and  attorneys'  fees.  We have
successfully moved the court to indefinitely stay all proceedings in this matter
in light of a forum  selection  clause  designating  Nevada  state courts as the
proper forum. Attorneys for Reep have indicated that they intend to file suit in
Nevada,  but to date have not done so. We intend to  vigorously  defend any case
brought against us by Reep.

Applied DNA Sciences, Inc. v. Paul Reep, Adrian Butash,  John  Barnett,   Chanty
Cheang, Jaime Cardona, and Angela Wiggins, Case No. CV06-2027 RGK

         We filed this action against the defendants,  Paul Reep, Adrian Butash,
John Barnett, Chanty Cheang, Jaime Cardona, and Angela Wiggins on April 4, 2006,
in the United States District Court for the Central  District of California.  In
this  matter we have  asked the court to make a judicial  determination  that an
agreement  amending the employment  contracts of all named defendants,  which we
did not  authorize  and  which is the  basis of the Reep and  Butash  litigation
against Applied DNA, is invalid and  unenforceable.  This matter is in the early
stages of discovery. Trial has been set for April 3, 2007.

Barnett, et al. v. Applied DNA Sciences, et al., Case No.:  BC  350904

         Plaintiffs John D. Barnett,  Jr., Adrian Butash,  Jaime A. Cardona, and
Chanty  Cheang,  our  former  employees,  filed suit  against  us,  Applied  DNA
Operations  Management,  Inc., APDN (B.V.I.),  Inc., Peter Brocklesby,  James A.
Hayward,  and Jun-Jei  Sheu in Los Angeles  County  Superior  Court on April 17,
2006.  The complaint  alleges  causes of action for breach of written  contract,
breach of oral contract,  fraud,  violations of the  California  Labor Code, and
wrongful  termination.  The complaint  seeks  $159,000  (trebled to $477,000) in
alleged unpaid salary, $546,000 in severance pay, other unspecified compensatory
and consequential  damages,  unspecified  punitive damages,  attorneys' fees and
costs,  and interest.  With the exception of Peter  Brocklesby,  all defendants,
including us, have answered the  complaint.  The trial date has been set for May
21, 2007.

In re the Unemployment Insurance Claims of Adrian Butash, John Barnett, and Paul
Reep,  California   Unemployment   Insurance   Appeals  Board Case Nos. 1809031,
1801356, and 1842399, respectively.

         We are in the  process  of  appealing  an  administrative  law  judge's
determination  John  Barnett,  Paul Reep,  and Adrian  Butash  are  entitled  to
unemployment  benefits  following  their  separation from employment with us and
that our unemployment  insurance account will be charged.  We will appeal on the
determination  on the grounds that the  claimants  were  terminated  for reasons
other than lack of work. We have filed a notice of appeal, and no trial date has
yet been set.

                                       15





Douglas A. Falkner v. Applied DNA Sciences, Inc./N.C. Industrial Commission File
No. 585698

         Plaintiff  Douglas Falkner  ("Falkner")  filed a worker's  compensation
claim in North Carolina for an alleged  work-related neck injury that he alleges
occurred  on January  14,  2004.  Falkner  worked as  Business  Development  and
Operations  Manager  at our sole East  Coast  office at the time of the  alleged
injury. Plaintiff Falkner was the only employee employed by us in North Carolina
at the time of the alleged  injury and we have  employed no other  employees  in
North  Carolina  at any  other  time.  The claim  has been  denied  and is being
defended on several  grounds,  including  the lack of both  personal and subject
matter  jurisdiction.  Specifically,  we  contend  that  we did not  employ  the
requisite  minimum  number of  employees  in North  Carolina  at the time of the
alleged  injury  and that the  company  is  therefore  not  subject to the North
Carolina Workers'  Compensation Act. The claim was originally set for hearing in
January  2007,  but was  continued  to allow the  parties  to engage in  further
discovery.

ITEM 4. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS.

          None.

                                   PART II

ITEM 5. MARKET FOR COMMON EQUITY AND RELATED STOCKHOLDER MATTERS.

Market Information

         Our Common  Stock is traded  over-the-counter  on The Over The  Counter
Bulletin Board (the "OTC Bulletin Board") maintained by the National Association
of Securities  Dealers under the symbol  "APDN." There is no certainty  that the
Common  Stock will  continue to be quoted or that any  liquidity  exists for our
shareholders.

         The  following  table sets forth the  quarterly  quotes of high and low
prices for our Common  Stock on the OTC  Bulletin  Board during the fiscal years
ended September 30, 2005 and September 30, 2006. In February of 2003, we changed
our year end to September 30. We changed our fiscal year end in connection  with
a reverse  merger we entered  into in December  2002,  in which the acquirer for
accounting  purposes had a fiscal year end of  September  30. For ease of fiscal
reporting, we adopted the same fiscal year end.




                       Fiscal 2006                     Fiscal 2005
                      =============                   ============

                       High             Low            High           Low
                      =============    ===========    ============   ===========
                                                          
      First Quarter    $0.58            $0.16          $2.39          $0.42
      Second Quarter   $0.37            $0.15          $1.83          $0.78
      Third Quarter    $0.27            $0.10          $1.01          $0.58
      Fourth Quarter   $0.17            $0.07          $0.74          $0.48


Holders

         As of December  29, 2006,  we had  approximately  1,309  holders of our
common stock.  The number of record holders was  determined  from the records of
our transfer agent and does not include  beneficial owners of common stock whose
shares  are  held  in the  names  of  various  security  brokers,  dealers,  and
registered clearing agencies. The transfer agent of our common stock is American
Stock Transfer & Trust Company, 6201 15th Avenue, Brooklyn, New York 11219.

Dividends

         We have never  declared or paid any cash dividends on our common stock.
We  do  not  anticipate  paying  any  cash  dividends  to  stockholders  in  the
foreseeable future. In addition,  any future determination to pay cash dividends
will be at the  discretion of the Board of Directors and will be dependent  upon
our financial condition, results of operations,  capital requirements,  and such
other factors as the Board of Directors deem relevant.

Recent Sales of Unregistered Securities

         In October 2005, We issued  400,000 shares of common stock for services
rendered.  We  valued  the  shares  issued  at $0.50  per  share  for a total of
$200,000, which represents the fair value of the services received which did not
differ  materially  from  value  of the  services  received.  This  issuance  is
considered  exempt under Regulation D of the Securities Act of 1933 and Rule 506
promulgated thereunder.

         On July 10,  2006,  we  issued  2,400,000  shares  of  common  stock in
exchange for services  rendered.  We valued the shares issued at $0.20 per share
for a total of $480,000,  which did not differ  materially from the value of the
stock  issued and  represented  the fair value of the  services  received.  This
issuance is considered  exempt under  Regulation D of the Securities Act of 1933
and Rule 506 promulgated thereunder.

                                       16





         On  December  12,  2006 we issued  180,000  shares  of common  stock in
exchange for our  promissory  note in  principal  amount of $410,429 and accrued
interest thereon of $8,883. We valued the shares issued at $0.09 per share for a
total of $16,200.  This issuance is considered  exempt under Section  3(a)(9) of
the Securities Act of 1933.

ITEM 6. MANAGEMENT'S DISCUSSION AND ANALYSIS OR PLAN OF OPERATION.

         The  following  discussion  should  be read  in  conjunction  with  our
Consolidated  Financial Statements and Notes thereto,  included elsewhere within
this  report.  The  Annual  Report  on  Form  10-KSB  contains   forward-looking
statements  within the meaning of Section 21E of the Securities  Exchange Act of
1934, as amended,  including  statements using terminology such as "can", "may",
"believe", "designated to", "will", "expect", "plan", "anticipate",  "estimate",
"potential"  or  "continue",   or  the  negative  thereof  or  other  comparable
terminology regarding beliefs,  plans,  expectations or intentions regarding the
future.  You should read statements  that contain these words carefully  because
they:

         o        discuss our future expectations;
         o        contain projections of our future results of operations  or of
                  our financial condition; and
         o        state other "forward-looking" information.

         We believe it is important to communicate  our  expectations.  However,
forward  looking  statements  involve  risks and  uncertainties  and our  actual
results and the timing of certain  events  could  differ  materially  from those
discussed  in  forward-looking  statements  as  a  result  of  certain  factors,
including those set forth under "Risk Factors," "Business" and elsewhere in this
prospectus.  All  forward-looking  statements and risk factors  included in this
document are made as of the date hereof, based on information available to us as
of the date thereof,  and we assume no obligations to update any forward-looking
statement or risk factor, unless we are required to do so by law.

Introduction

         We provide  botanical  DNA  encryption,  embedment  and  authentication
solutions  that can help  protect  companies,  governments  and  consumers  from
counterfeiting,   fraud,   piracy,   product  diversion,   identity  theft,  and
unauthorized  intrusion  into physical  locations and  databases.  Our SigNature
Program provides a secure,  accurate and  cost-effective  means for customers to
incorporate  our  SigNature  DNA  Markers  in,  and then  quickly  and  reliably
authenticate  and  identify,  a  broad  range  of  items  such  as  artwork  and
collectibles,   fine  wine,   consumer   products,   digital  media,   financial
instruments,  identity cards and other official documents. Having the ability to
reliably  authenticate and identify  counterfeit  versions of such items enables
companies   and   governments   to  detect,   deter,   interdict  and  prosecute
counterfeiting enterprises and individuals.

         Our   SigNature    Program    enables   our   potential    clients   to
cost-effectively:

         o        assure manufacturers, suppliers, distributors,  retailers  and
                  end-users  that  their  products  are  authentic  and  can  be
                  forensically authenticated;
         o        integrate our  SigNature  DNA Markers with  existing  security
                  solutions  such as barcodes,  radio  frequency  identification
                  (RFID)  tags,  holograms,   microchips  and  other  securities
                  measures; and
         o        add value to the "bottom-line"  by helping to diminish product
                  diversion and counterfeiting.

         Counterfeit  and diverted  products  continue to pose a significant and
growing  problem  with  consumer  packaged  goods,  especially  for prestige and
established  brands worldwide.  Piracy,  identity theft and forged documents and
items are also highly prevalent in vertical markets such as digital media,  fine
art, luxury goods, and alcoholic beverages. Key aspects of our strategy include:

         o        continuing to improve and customize our solution to  meet  our
                  potential customers' needs;
         o        continuing  to  develop  and  enhance  our existing DNA marker
                  authentication technologies;
         o        expanding  our  customer  base both domestically and abroad by
                  targeting high volume markets; and
         o        augmenting   our   competitive   position   through  strategic
                  acquisitions and alliances.

Plan of Operations

General

         We expect to generate revenues  principally from sales of our SigNature
Program. We are currently  attempting to develop business in six target markets:
art and collectibles,  fine wine,  consumer  products,  digital recording media,
pharmaceuticals, and homeland security driven programs. We intend to pursue both
domestic  and  international  sales  opportunities  in  each of  these  vertical
markets.

         We believe that our existing  capital  resources will enable us to fund
our operations until  approximately April 2007. We believe we may be required to
seek  additional   capital  to  sustain  or  expand  our  prototype  and  sample

                                       17





manufacturing, and sales and marketing activities, and to otherwise continue our
business  operations  beyond that date.  We have no  commitments  for any future
funding,  and may not be able to obtain additional  financing or grants on terms
acceptable  to  us,  if at  all,  in the  future.  If we are  unable  to  obtain
additional capital this would restrict our ability to grow and may require us to
curtail or discontinue our business operations.  Additionally, while a reduction
in our business  operations  may prolong our ability to operate,  that reduction
would harm our ability to implement our business strategy.  If we can obtain any
equity  financing,  it may involve  substantial  dilution  to our then  existing
shareholders.

Product Research and Development

         We anticipate spending  approximately $200,000 for product research and
development activities during the next twelve (12) months.

Acquisition of Plant and Equipment and Other Assets

         We do not  anticipate  the  sale of any  material  property,  plant  or
equipment  during the next 12 months.  We do anticipate  spending  approximately
$100,000 on the acquisition of leasehold improvements during the next 12 months.
We believe our current  leased  space is adequate to manage our growth,  if any,
over the next 2 to 3 years.

Number of Employees

         From our inception through the period ended September 30, 2006, we have
principally  relied on the  services of outside  consultants  for  services.  We
currently have seven employees and two part-time  employees.  Specifically,  the
company   expects  to  increase  its  staffing   dedicated  to  sales,   product
prototyping,  manufacturing of DNA markers and forensic authentication services.
Expenses related to travel,  marketing,  salaries,  and general overhead will be
increased  as  necessary  to support our growth in  revenue.  In order for us to
attract  and  retain  quality  personnel,  we  anticipate  we will have to offer
competitive  salaries  to future  employees.  We  anticipate  that it may become
desirable to add additional full and or part time employees to discharge certain
critical  functions  during  the next 12  months.  This  projected  increase  in
personnel is dependent upon our ability to generate  revenues and obtain sources
of  financing.  There is no guarantee  that we will be successful in raising the
funds required or generating  revenues sufficient to fund the projected increase
in the number of employees.  As we continue to expand,  we will incur additional
costs for personnel.

Critical Accounting Policies

         Financial  Reporting  Release No. 60, published by the SEC,  recommends
that all companies include a discussion of critical  accounting policies used in
the  preparation  of their  financial  statements.  While all these  significant
accounting policies impact our financial condition and results of operations, we
view certain of these policies as critical.  Policies  determined to be critical
are those  policies that have the most  significant  impact on our  consolidated
financial  statements and require management to use a greater degree of judgment
and estimates. Actual results may differ from those estimates.

         We believe that given current facts and  circumstances,  it is unlikely
that applying any other  reasonable  judgments or estimate  methodologies  would
cause a material  effect on our  consolidated  results of operations,  financial
position or liquidity for the periods presented in this report.

         The accounting policies identified as critical are as follows:

         o        Equity issued with registration rights
         o        Warrant liability
         o        Fair value of intangible assets

Equity Issued with Registration Rights

         In connection with placement of our  convertible  notes and warrants to
certain  investors during the fiscal quarters ended December 31, 2003,  December
31, 2004,  March 31, 2005,  March 31, 2006 and June 30, 2006, we granted certain
registration  rights that provide for liquidated damages in the event of failure
to timely perform under the agreements. Although these notes and warrants do not
provide for net-cash  settlement,  the existence of liquidated  damages provides
for a defacto net-cash settlement option. Therefore, the common stock underlying
the notes and  warrants  subject to such  liquidated  damages  does not meet the
tests required for shareholders' equity classification, and accordingly has been
reflected  between  liabilities  and  equity  in the  accompanying  consolidated
balance sheet until such time as the conditions are eliminated.

Warrant Liability

                                       18





         In  connection  with the  placement  of certain  debt  instruments,  as
described  above,  we issued  freestanding  warrants.  Although the terms of the
warrants do not  provide  for  net-cash  settlement,  in certain  circumstances,
physical or  net-share  settlement  is deemed to not be within our control  and,
accordingly,  we are  required to account for these  freestanding  warrants as a
derivative financial instrument liability, rather than as shareholders' equity.

         The warrant  liability is  initially  measured and recorded at its fair
value,  and is then re-valued at each reporting  date,  with changes in the fair
value  reported as non-cash  charges or credits to earnings.  For  warrant-based
derivative financial instruments, the Black-Scholes option pricing model is used
to value the warrant liability.

         The  classification of derivative  instruments,  including whether such
instruments  should be recorded as liabilities  or as equity,  is re-assessed at
the  end  of  each  reporting  period.  Derivative  instrument  liabilities  are
classified  in the balance sheet as current or  non-current  based on whether or
not net-cash settlement of the derivative instrument could be required within 12
months of the balance sheet date.

         We do not use derivative  instruments to hedge  exposures to cash flow,
market, or foreign currency risks.

Fair Value of Intangible Assets

         We have adopted SFAS No. 142,  Goodwill  and Other  Intangible  Assets,
whereby we periodically test our intangible assets for impairment.  On an annual
basis,  and when  there is  reason  to  suspect  that  their  values  have  been
diminished or impaired, these assets are tested for impairment,  and write-downs
will be included  in results  from  operations.  On July 12,  2005,  we acquired
certain intellectual properties from Biowell through an Asset Purchase Agreement
in exchange  for 36 million  shares of our  restricted  common  stock  having an
aggregate fair value at the date of issuance of $24.12 million. The value of the
acquired  intangible  assets was  $9,430,900,  with the balance of the  purchase
price, or $14,689,100, charged to operations as a cost of the transaction.

         During  the year ended  September  30,  2006,  the  Company  management
preformed an evaluation of its  intangible  assets  (intellectual  property) for
purposes of  determining  the implied fair value of the assets at September  30,
2006.  The  test  indicated  that  the  recorded  remaining  book  value  of its
intellectual  property exceeded its fair value, as determined by discounted cash
flows. As a result,  upon completion of the  assessment,  management  recorded a
non-cash impairment charge of $5,655,011,  net of tax, or $0.05 per share during
the year ended September 30, 2006 to reduce the carrying value of the patents to
$2,091,800.  Considerable  management judgment is necessary to estimate the fair
value.  Accordingly,  actual results could vary  significantly from management's
estimates.

         The identifiable intangible assets acquired and their carrying value at
September 30, 2006 are:




                                                                                    Weighted
                                                                                     Average
                    Gross          Accumulated                                     Amortization
                                  Amortization
                   Carrying            and                           Residual         Period
                                    Impairment
                    Amount            Charge             Net           Value          (Years)
                 =============    ==============    =============   ===========    ==============
                                                                        
Amortizable
Intangible
Assets:

Intellectual
Property          $9,430,900       $7,339,100        $2,091,800             --           7

Patents             34,237           18,574            15,663               --           5

Total
Amortized
Identifiable
Intangible        $9,465,137       $7,357,674        $2,107,463             --         6.99
                 =============    ==============    =============
                                                                            --


                                       19





         Total  amortization  expense  charged to operations  for the year ended
September 30, 2006 and 2005 were $1,354,101 and $346,825.

         Estimated amortization expense as of September 30, 2006 are as follows:



                           
          2007                $   370,643
          2008                    370,643
          2009                    365,753
          2010                    363,792
          2011 and after          636,632

          Total               $ 2,107,463


Use of Estimates

         In  preparing  financial   statements  in  conformity  with  accounting
principles  generally  accepted in the United  States of America,  management is
required to make estimates and assumptions  that affect the reported  amounts of
assets and liabilities  and the disclosure of contingent  assets and liabilities
at the date of the  financial  statements  and revenue and  expenses  during the
reporting  period.  The most  significant  estimates relate to the estimation of
percentage  of  completion  on  uncompleted  contracts,  valuation of inventory,
allowance for doubtful  accounts and estimated  life of customer  lists.  Actual
results could differ from those estimates.

Restatement of Consolidated Financial Statements

         The Company has restated its  consolidated  financial  statements as of
September  30, 2005 and for the year ended  September 30, 2005 and the quarterly
unaudited data for the first three quarters of 2006 and all of 2005.

         These  restatements  and resulting  revisions  relate to the accounting
treatment for and disclosing the issuance by the Company of options and warrants
to acquire the Company's common stock. In addition the Company corrected certain
errors in  accounting  for the  exchange  of its  common  stock  for  previously
incurred  debt  with  a  Company  director.  These  errors  were  discovered  in
connection  with comments  raised by the SEC in their review and comment on this
Registration Statement.

         In this regard,  you should rely on the restated  financial results for
the year and each of the  quarters  in the years 2005 and the first,  second and
third  quarters of 2006 and, as the Company  previously  reported in its Current
Report on Form 8-K,  dated May 16,  2006,  you should not rely on the  Company's
previously  issued  consolidated   financial   statements  and  other  financial
information for these reporting periods.

         As a result, the accompanying consolidated financial statements for the
year ended September 30, 2005 and the quarterly periods ended December 31, 2005,
March 31, 2006 and June 30, 2006 have been restated from the amounts  previously
reported to correct the accounting for financial  derivatives.  While the effect
of  the   corrections  to  the  financial   statements  is  fully  described  in
accompanying  notes  to the  restated  consolidated  financial  statements,  the
following  is a summary of the net  effect of the  errors on these  consolidated
financial statements:

         o        the Company's net loss for the year  ended  September 30, 2005
                  increased by $14,499,139 from $52,610,380 to $67,109,519;
         o        the  Company's  current  liabilities  as of September 30, 2005
                  increased by $384,651 from $2,595,897 to $2,980,548; and,
         o        the  Company's  other   liabilities,   representing   warranty
                  liabilities, as of September 30, 2005 increased by $13,673,574
                  from $0 to $13,673,574.

Revenues

         From our inception on September 16, 2002, we did not generate  material
revenues from operations. We have, however, generated $0.019 million in sales of
our products for the year ended  September  30, 2006.  Our cost of sales for the
same period was $0.016 million netting us a gross profit of $0.003 million.  All
of our revenues from sales of our products in the year ended  September 30, 2006
are attributable to Dr. Suwelack Skin & Health Care AG ("Dr.  Suwelack").  James
A. Hayward, a director and our Chief Executive Officer, serves on Dr. Suwelack's
board of directors.  BioCogent,  whose President and Chief Executive Officer and
sole stockholder is Dr. Hayward, provides consulting services to Dr. Suwelack.


Costs and Expenses

Selling, General and Administrative

                                       20





         Selling,  general and  administrative  expenses  for the twelve  months
ended  September 30, 2006 compared to 2005  decreased  496% to $8.5 million from
$50.7 million in the prior  period.  See a discussion of non cash items below in
the Liquidity & Capital Resources section.  Included within the selling, general
and administrative  expenses for the year ended September 30, 2005 were expensed
intellectual  property of $14.7  million and costs  relating to fund raising and
consultant costs of $4.7 million. Additionally, for the year ended September 30,
2006,  we had a reduction in fair value of warrants  issued to non  employees of
$5.8 million as compared to the year ended September 30, 2005 and a reduction in
common  stock  issued in exchange  for  services  rendered  of $16.8  million as
compared to the same period last year.

Research and Development

         Research and  development  expenses  decreased  $485,682 for the twelve
months  ended  September  30, 2006  compared  to 2005 from $0.6  million to $0.2
primarily due to deceased independent testing costs.

Depreciation and Amortization

         In the  twelve  months  ended  September  30,  2006,  depreciation  and
amortization  increased $1,014,033 for the period compared to 2005 from $356,266
to $1,370,299.  The increase is attributable to entire year  amortization of our
intellectual property acquired in 2005.

Impairment of intangible asset(s)

         During the year ended September 30, 2006, we performed an evaluation of
our intangible  assets  (intellectual  property) and determined that the implied
fair carrying value exceeded its fair value. Accordingly, we recorded a non cash
impairment  charge to operations of $5.7 million in the year ended September 30,
2006 as compared to $0 in the prior year.

Total Operating Expenses

         Total operating expenses decreased to $15.7 million from $51.7 million,
or a decrease of $36 million as a result of the  combination  of factors  listed
above.

Other Income/Loss

         Net loss for the twelve months ended  September 30, 2006 decreased to a
loss of $2.4  million  from a loss of $67.1  million  in the  prior  period as a
result of the combination of factors described above.

Interest Expenses

         Interest  expense,  for the twelve  months  ended  September  30,  2006
decreased  to $3.6  million  from $32.1  million in the same period of 2005,  an
decrease of $28.5 million.  For the year ended September 30, 2005, we incurred a
non cash  interest  expense  relating  to the fair value of  warrants  issued in
conjunction with our financing of $23.1 million.

Net Income (loss)

         Net loss for the twelve months ended  September 30, 2006 decreased to a
loss of $2.4 million from a loss of $6.7 million in the prior period as a result
of the combination of factors described above.

Liquidity and Capital Resources

         Our  liquidity  needs  consist  of our  working  capital  requirements,
indebtedness   payments  and  research  and  development   expenditure  funding.
Historically,  we have  financed our  operations  through the sale of equity and
convertible debt as well as borrowings from various credit sources.

         As of September  30,  2006,  we had a working  capital  deficit of $4.6
million.  For the year ended  September  30, 2006,  we generated a net cash flow
deficit from operating  activities of $2.8 million consisting  primarily of year
to date losses of $2.4 million.  Non cash  adjustments  included $2.0 million in
depreciation and amortization  charges, $5.7 million in impairment charges, $3.0
million for options, warrants and common stock issued in exchange for  services,
$2.3 million in  financing  costs  attributable  to issuance of warrants and net
change in net  increase in current  liabilities  of $2.5  million net with a non
cash  adjustment  of $16.8  million for income  attributable  to  re-pricing  of
warrants and debt derivatives.  Cash used in investing  activities  totaled $0.2
million,  which was utilized for  acquisition  of property and  equipment.  Cash
provided by financing  activities for the year ended  September 30, 2006 totaled
$4.2 million consisting of proceeds from issuance of convertible debt.

         We expect capital expenditures to be less than $500,000 in fiscal 2007.
Our primary  investments will be in laboratory  equipment to support prototyping
and our authentication services.

                                       21





         Exploitation of potential  revenue  sources will be financed  primarily
through the sale of securities  and  convertible  debt,  exercise of outstanding
warrants,  issuance of notes  payable and other debt or a  combination  thereof,
depending upon the transaction size, market conditions and other factors.

         While we have raised capital to meet our working  capital and financing
needs in the past,  additional financing is required within the next 3 months in
order to meet our current and projected  cash flow deficits from  operations and
development.  We have  sufficient  funds to conduct our  operations  for several
months,  but not for 3 months or more.  There can be no assurance that financing
will be available in amounts or on terms acceptable to us, if at all.

         By  adjusting  our   operations   and   development  to  the  level  of
capitalization,  we  believe  we  have  sufficient  capital  resources  to  meet
projected cash flow deficits.  However, if during that period or thereafter,  we
are not  successful in generating  sufficient  liquidity  from  operations or in
raising sufficient capital resources, on terms acceptable to us, this could have
a material adverse effect on our business,  results of operations  liquidity and
financial condition.

         Our registered  independent certified public accountants have stated in
their report dated January 5, 2007,  that we have incurred  operating  losses in
the last two  years,  and that we are  dependent  upon  management's  ability to
develop profitable operations.  These factors among others may raise substantial
doubt about our ability to continue as a going concern.

         In fiscal 2005, we completed two private placements of convertible debt
and  associated  warrants.  In November  and  December,  2004 we issued and sold
$1.465 million in aggregate principal amount of promissory notes, convertible at
$0.50 per share,  and associated  warrants to purchase up to 2,930,000 shares of
our common stock, exercisable at $0.75 per share for three years from their date
of issuance,  to 13 investors (the "December 2004  Placement").  Each promissory
note was automatically convertible into shares of our common stock at a price of
$0.50 per share upon the closing of a subsequent  private placement by us for at
least $1  million.  In January and  February of 2005,  we issued and sold $7.371
million in  aggregate  principal  amount of 10% Secured  Convertible  Promissory
Notes, convertible at $0.50 per share, and associated warrants to purchase up to
14,742,000 shares of our common stock, exercisable at $0.75 per share until five
years from their date of issuance,  to 61 investors  (the  "January and February
2005  Placement").  Upon the closing of the January and February 2005  Offering,
the notes issued in the December 2004 Placement  automatically converted into an
aggregate of 2,930,000  shares of our common stock,  and upon the filing of this
registration statement on February 15, 2005, the notes issued in the January and
February 2005 Placement  automatically converted into an aggregate of 14,742,000
shares of our common stock.  Additional private placements in fiscal 2005 raised
$243,000. We also received proceeds of $60,000 from the exercise of a warrant to
purchase  100,000  shares of our common stock in fiscal 2005. The $9.135 million
in gross proceeds from these private  placements and warrant exercises were used
to  fund  commissions,   fees  and  expenses  associated  with  the  placements,
consultants and public reporting costs, salaries and wages, royalties,  research
and development,  facility costs as well as general working capital needs. Since
the  conversion  price of the notes issued in the  November  and December  2003,
December 2004,  December 2005 and the January and February 2005  placements were
less than the  market  price of our common  stock at the time  these  notes were
issued, we recognized a charge relating to the beneficial  conversion feature of
these notes during the quarter in which they are issued.

         In fiscal 2006, we completed  three  additional  private  placements of
convertible  debt and  associated  warrants.  On November 3, 2005, we issued and
sold  a  promissory  note  in  the  principal   amount  of  $550,000  to  Allied
International  Fund, Inc.  ("Allied").  Allied in turn financed a portion of the
making  of this loan by  borrowing  $450,000  from  certain  persons,  including
$100,000 from James A. Hayward, a director and our Chief Executive Officer.  The
terms of the promissory note provided that we issue upon the funding of the note
warrants to purchase  5,000,000  shares of our common stock at an exercise price
of $0.50 per share to certain persons designated by Allied. On November 9, 2005,
we issued  nine  warrants  to Allied  and eight  other  persons to  purchase  an
aggregate of 5,500,000  shares of our common stock at an exercise price of $0.50
per share.  These warrants included a warrant to purchase  1,100,000 shares that
was issued to James A. Hayward, a director and our Chief Executive  Officer.  We
paid $55,000 in cash to VC Arjent,  Ltd. for its services as the placement agent
with respect to this  placement.  All principal and accrued but unpaid  interest
under the promissory note was paid in full shortly after the closing of and from
the proceeds of a private  placement we completed on March 8, 2006.  On March 8,
2006,  we issued and sold an aggregate of 30 units  consisting  of (i) a $50,000
principal amount secured convertible promissory note bearing interest at 10% per
annum and convertible at $0.50 per share, and (ii) a warrant to purchase 100,000
shares  of our  common  stock  at an  exercise  price of $0.50  per  share,  for
aggregate  gross  proceeds  of $1.5  million.  The units were sold  pursuant  to
subscription  agreements by and between each of the  purchasers  and Applied DNA
Operations  Management,   Inc.,  a  Nevada  corporation  and  our  wholly  owned
subsidiary       (our           "Subsidiary").        The       $2.050   million

                                       22





in gross proceeds from these first two offerings were held by our Subsidiary for
our benefit and used to fund commissions, fees and expenses associated  with the
placements,   to   repay   the  outstanding promissory note described above plus
accrued   interest   thereunder,  to fund financing fees, consultants and public
reporting costs, salaries and wages, research and development, facility costs as
well  as   and general working capital needs. On March 24, 2006, we commenced an
offering   (the "Offshore  Offering") of up to 140 units,  at a price of $50,000
per   unit,  for  a  maximum  offering  of  $7  million  for sale to "accredited
investors" who are not "U.S. persons." The units being  sold  as  part  of   the
Offshore Offering consist of (i) a $50,000  principal amount secured convertible
promissory  note,  and (ii) a warrant to  purchase 100,000 shares of our  common
stock  at  a  price of $0.50 per  share.  On May 2, 2006, we closed on the first
tranche of the Offshore  Offering in which we sold 20 units for aggregate  gross
proceeds of  $1,000,000.  We paid Arjent  Limited $375,000 in commissions,  fees
and  expenses  from  these  gross  proceeds. On  June 15, 2006, we completed the
second  tranche of the Offshore Offering in which we sold 59 units for aggregate
gross proceeds of $2,950,000. We paid Arjent Limited $442,500  in   commissions,
fees and expenses from these gross  proceeds. Additionally,  on July 10, 2006 we
issued 2.4 million shares of  our  common  stock to Arjent Limited at $0.001 per
share as partial  consideration for its services in connection with the Offshore
Offering.

         On March 29,  2006 and April 13,  2006,  we  borrowed  $200,000  in the
aggregate, at a rate of 7.5% per annum, from BioCogent whose President and Chief
Executive Officer and sole stockholder is James A. Hayward, one of our directors
and our Chief  Executive  Officer.  These  loans were due and  payable  upon the
earlier  to occur of (1) the  close of  business  on June 30,  2006,  or (2) the
closing of the  issuance  and sale of our  securities  for gross  proceeds of at
least  $250,000.  The  proceeds  from the loans were used for general  corporate
purposes.  The note issued on March 29,  2006 was repaid  with  interest in May,
2006. The note issued on April 13, 2006 was repaid with interest in June, 2006.

         We presently do not have any available credit,  bank financing or other
external sources of liquidity. Due to our brief history and historical operating
losses,  our  operations  have not been a source of  liquidity.  We will need to
obtain additional  capital in order to expand operations and become  profitable.
We intend to pursue the  building  of a  re-seller  network  outside  the United
States, and if successful, the re-seller agreements would constitute a source of
liquidity and capital over time. In order to obtain capital, we may need to sell
additional  shares of our common  stock or borrow  funds from  private  lenders.
There can be no assurance  that we will be  successful  in obtaining  additional
funding and execution of re-seller agreements outside the Unites States.

         We  will  still  need  additional  investments  in  order  to  continue
operations to cash flow break even. Additional investments are being sought, but
we cannot guarantee that we will be able to obtain such  investments.  Financing
transactions  may include the issuance of equity or debt  securities,  obtaining
credit facilities, or other financing mechanisms.  However, the trading price of
our common stock and the downturn in the U.S.  stock and debt markets could make
it more  difficult  to obtain  financing  through the issuance of equity or debt
securities. Even if we are able to raise the funds required, it is possible that
we could  incur  unexpected  costs and  expenses,  fail to  collect  significant
amounts owed to us, or experience  unexpected cash requirements that would force
us to seek alternative financing. Further, if we issue additional equity or debt
securities,  stockholders may experience  additional  dilution or the new equity
securities  may  have  rights,  preferences  or  privileges  senior  to those of
existing  holders of our common stock. If additional  financing is not available
or is not available on acceptable terms, we will have to curtail our operations.

         Substantially  all of the real  property used in our business is leased
under operating lease agreements.

Off-Balance Sheet Arrangements

         We do not have any off-balance sheet arrangements.

Going Concern

         The financial  statements included in this filing have been prepared in
conformity with generally  accepted  accounting  principles that contemplate our
continuance as a going concern.  Our auditors,  in their report dated January 5,
2007,  have expressed  substantial  doubt about our ability to continue as going
concern.  Our cash position may be inadequate to pay all of the costs associated
with the testing,  production and marketing of our products.  Management intends
to use  borrowings  and the sale of equity or  convertible  debt to mitigate the
effects of its cash  position,  however no  assurance  can be given that debt or
equity  financing,  if and  when  required  will  be  available.  The  financial
statements do not include any  adjustments  relating to the  recoverability  and
classification  of recorded assets and  classification of liabilities that might
be necessary should we be unable to continue existence.

                                       23





FACTORS THAT COULD AFFECT FUTURE RESULTS

         Because of the following factors,  as well as other variables affecting
our operating results and financial  condition,  past financial  performance may
not be a reliable indicator of future performance,  and historical trends should
not be used to anticipate results or trends in future periods.

Risks Relating to Our Business:

We have a Short Operating History, a Relatively New Business Model, and Have Not
Produced  Significant  Revenues.  This Makes it Difficult to Evaluate Our Future
Prospects and Increases the Risk That We Will Not Be Successful.

         We have a short  operating  history  with our current  business  model,
which involves the marketing, sale and distribution of botanical DNA encryption,
embedment  and  authentication  products  and  services,   which  are  based  on
technologies  that we  acquired  in July 12,  2005  from,  and some of which are
manufactured for us by, Biowell Technology,  Inc. ("Biowell").  We first derived
revenue  from this  model in the  second  calendar  quarter  of 2006,  which was
insignificant.  Prior to the July 12, 2005 acquisition, our operations consisted
principally of providing marketing and business development services to Biowell.
As a result,  we have a very  limited  operating  history for you to evaluate in
assessing our future  prospects.  We are in the process of transitioning  from a
developmental  stage to an early-stage growth  enterprise.  Our operations since
inception  have  not  produced  significant   revenues,   and  may  not  produce
significant  revenues in the near term, or at all, which may harm our ability to
obtain  additional  financing  and may require us to reduce or  discontinue  our
operations.  If we create revenues in the future,  prior to our  introduction of
any new  products,  we will derive all such  revenues from the sale of botanical
DNA  encryption,  encapsulation,   embedment  and  authentication  products  and
services,  which is an immature  industry.  You must  consider  our business and
prospects  in  light of the  risks  and  difficulties  we will  encounter  as an
early-stage  company in a new and rapidly evolving industry.  We may not be able
to successfully address these risks and difficulties,  which could significantly
harm our business, operating results, and financial condition.

We Have a History Of Losses Which May  Continue,  and Which May Harm Our Ability
to Obtain Financing and Continue Our Operations.

         We incurred net losses of $2.4 million for the year ended September 30,
2006 and $6.7 million for the year ended  September  30, 2005.  These net losses
have  principally  been the  result of the  various  costs  associated  with our
selling,  general  and  administrative  expenses  as  we  commenced  operations,
acquired, developed and validated technologies,  began marketing activities, and
our interest  expense on notes and warrants we issued to obtain  financing.  Our
operations are subject to the risks and competition inherent in a company moving
from the  development  stage to a new  growth  enterprise.  We may not  generate
sufficient  revenues from  operations to achieve or sustain  profitability  on a
quarterly, annual or any other basis in the future. Our revenues and profits, if
any, will depend upon various factors,  including  whether our existing products
and  services or any new products and services we develop will achieve any level
of market acceptance.  If we continue to incur losses,  our accumulated  deficit
will  continue  to  increase,  which might  significantly  impair our ability to
obtain additional  financing.  As a result, our business,  results of operations
and financial condition would be significantly harmed, and we may be required to
reduce or terminate our operations.

If We Are Unable to Obtain Additional  Financing Our Business Operations Will be
Harmed  or  Discontinued,   and  If  We  Do  Obtain  Additional   Financing  Our
Shareholders May Suffer Substantial Dilution.

         We believe that our existing  capital  resources will enable us to fund
our operations until  approximately  April, 2007. We believe we will be required
to seek  additional  capital  to  sustain  or expand  our  prototype  and sample
manufacturing, and sales and marketing activities, and to otherwise continue our
business  operations  beyond that date.  We have no  commitments  for any future
funding,  and may not be able to obtain additional  financing or grants on terms
acceptable  to  us,  if at  all,  in the  future.  If we are  unable  to  obtain
additional capital this would restrict our ability to grow and may require us to
curtail or discontinue our business operations.  Additionally, while a reduction
in our business  operations  may prolong our ability to operate,  that reduction
would harm our ability to implement our business strategy.  If we can obtain any
equity  financing,  it may involve  substantial  dilution  to our then  existing
shareholders.

Our Independent Auditors Have Expressed Substantial Doubt About Our  Ability  to
Continue  As  a  Going  Concern,  Which  May Hinder Our Ability to Obtain Future
Financing.

         In their report dated January 5, 2007, our independent  auditors stated
that our  financial  statements  for the year  ended  September  30,  2006  were
prepared   assuming   that   we  would   continue   as  a   going  concern,  and
that   they   have   substantial    doubt    about  our  ability    to  continue
as   a     going    concern.  Our   auditors'    doubts   are   based   on   our

                                       24





incurring net losses of $92.3 million  during the period from September 16, 2002
(date   of   inception)  to   September  30, 2006. We continue to experience net
operating losses.  Our ability to continue as a going concern is subject  to our
ability to  generate  a  profit  and/or  obtain  necessary  funding from outside
sources, including by the sale of our securities, obtaining loans from financial
institutions, or  obtaining  grants  from  various organizations or governments,
where possible. Our continued net  operating  losses  and  our  auditors  doubts
increase the difficulty of our meeting such goals and our efforts to continue as
a going concern may not prove successful.

If Our Existing Products and Services are Not Accepted by Potential Customers or
We Fail to  Introduce  New  Products  and  Services,  Our  Business,  Results of
Operations and Financial Condition Will be Harmed.

         There has been limited or no market  acceptance  of our  botanical  DNA
encryption, encapsulation, embedment and authentication products and services to
date. Some of the factors that will affect whether we achieve market  acceptance
of our solutions include:

         o        availability,  quality  and  price  relative   to  competitive
                  solutions;
         o        customers' opinions of the solutions' utility;
         o        ease of use;
         o        consistency with prior practices;
         o        scientists' opinions of the solutions' usefulness;
         o        citation of the solutions in published research; and
         o        general  trends  in  anti-counterfeit  and security solutions'
                  research.

         The expenses or losses  associated  with the  continued  lack of market
acceptance  of our  solutions  will harm our  business,  operating  results  and
financial condition.

         Rapid technological  changes and frequent new product introductions are
typical  for the  markets we serve.  Our future  success  may depend in  part on
continuous,   timely   development   and   introduction   of  new  products that
address  evolving  market  requirements.   We  believe  successful  new  product
introductions may provide a significant  competitive advantage because customers
invest their time in selecting and learning to use new  products,  and are often
reluctant  to  switch  products.  To the  extent  we fail to  introduce  new and
innovative  products,  we  may  lose  any  market  share  we  then  have  to our
competitors, which will be difficult or impossible to regain. Any inability, for
technological  or other  reasons,  to  successfully  develop and  introduce  new
products could reduce our growth rate or damage our business.  We may experience
delays in the  development and  introduction  of products.  We may not keep pace
with the rapid  rate of change in  anti-counterfeiting  and  security  products'
research,  and any new  products  acquired or  developed  by us may not meet the
requirements of the marketplace or achieve market acceptance.

If We Are Unable to Retain the  Services of Drs.  Hayward or Liang We May Not Be
Able to Continue Our Operations.

         Our success depends to a significant  extent upon the continued service
Dr. James A. Hayward,  our Chief Executive Officer;  and Dr. Benjamin Liang, our
Secretary  and  Strategic  Technology   Development  Officer.  We  do  not  have
employment  agreements with Drs. Hayward or Liang.  Loss of the services of Drs.
Hayward or Liang could  significantly  harm our business,  results of operations
and financial  condition.  We do not maintain key-man  insurance on the lives of
Drs. Hayward or Liang.

The Markets for our SigNature Program are Very Competitive, and We May be Unable
to Continue to Compete Effectively in this Industry in the Future.

         The  principal   markets  for  our  SigNature   Program  are  intensely
competitive.  We  compete  with  many  existing  suppliers  and new  competitors
continue to enter the market. Many of our competitors, both in the United States
and elsewhere,  are major pharmaceutical,  chemical and biotechnology companies,
or have  strategic  alliances  with  such  companies,  and  many  of  them  have
substantially  greater capital  resources,  marketing  experience,  research and
development  staff,  and  facilities  than we do. Any of these  companies  could
succeed in developing products that are more effective than the products that we
have or may  develop  and  may be  more  successful  than  us in  producing  and
marketing their existing  products.  Some of our competitors that operate in the
anti-counterfeiting  and  fraud  prevention  markets  include:  Applied  Optical
Technologies,  Authentix, ChemTAG, Collectors Universe Inc., Collotype, Data Dot
Technology,  Digimarc  Corp.,  DNA  Technologies,  Inc.,  Informium AG,  Inksure
Technologies, L-1 Identity Solutions, Manakoa, SmartWater Technology, SureTrace,
Tracetag and Warnex.


         We expect this  competition  to continue  and  intensify in the future.
Competition in our markets is primarily driven by:

         o        product performance, features and liability;

                                       25





         o        price;
         o        timing of product introductions;
         o        ability to develop, maintain and protect proprietary  products
                  and technologies;
         o        sales and distribution capabilities;
         o        technical support and service;
         o        brand loyalty;
         o        applications support; and
         o        breadth of product line.

         If  a  competitor   develops  superior   technology  or  cost-effective
alternatives to our products,  our business,  financial condition and results of
operations could be significantly harmed.

We Need to Expand Our  Sales,  Marketing  and  Support   Organizations  and  Our
Distribution   Arrangements  to  Increase  Market Acceptance of Our Products and
Services.

         We currently have few sales,  marketing,  customer  service and support
personnel  and will need to increase  our staff to generate a greater  volume of
sales and to  support  any new  customers  or the  expanding  needs of  existing
customers.  The employment  market for sales,  marketing,  customer  service and
support personnel in our industry is very competitive, and we may not be able to
hire the kind and  number of sales,  marketing,  customer  service  and  support
personnel we are targeting.  Our inability to hire qualified  sales,  marketing,
customer service and support personnel may harm our business,  operating results
and financial  condition.  We do not currently  have any  arrangements  with any
distributors  and we may not be able to enter into  arrangements  with qualified
distributors  on  acceptable  terms  or at all.  If we are not  able to  develop
greater distribution capacity, we may not be able to generate sufficient revenue
to support our operations.

A  Manufacturer's  Inability or  Willingness to Produce Our Goods on Time and to
Our Specifications Could Result in Lost Revenue and Net Losses.

         Though we manufacture prototypes, samples and some of our own products,
we currently do not own or operate any significant  manufacturing facilities and
depend  upon  independent  third  parties,  and  particularly  Biowell,  for the
manufacture  of some of our products to our  specifications.  The inability of a
manufacturer  to ship orders of such  products in a timely manner or to meet our
quality  standards could cause us to miss the delivery date  requirements of our
customers for those items, which could result in cancellation of orders, refusal
to accept deliveries or a reduction in purchase prices,  any of which could harm
our  business by  resulting  in  decreased  revenues or net losses upon sales of
products, if any sales could be made.

If We Need to Replace Manufacturers, Our Expenses Could Increase,  Resulting  in
Smaller Profit Margins.

         We compete  with other  companies  for the  production  capacity of our
manufacturers and import quota capacity.  Some of these competitors have greater
financial and other  resources  than we have,  and thus may have an advantage in
the  competition  for production and import quota  capacity.  If we experience a
significant  increase  in  demand,  or if our  existing  manufacturers  must  be
replaced,  we will need to establish new relationships  with another or multiple
manufacturers.   We  cannot  assure  you  that  this   additional   third  party
manufacturing  capacity  will be  available  when  required  on  terms  that are
acceptable  to  us  or  terms  similar  to  those  we  have  with  our  existing
manufacturers, either from a production standpoint or a financial standpoint. We
do not have long-term contracts with our manufacturers, and our manufacturers do
not  produce  our  products  exclusively.  Should we be forced  to  replace  our
manufacturers,  we may  experience an adverse  financial  impact,  or an adverse
operational  impact,  such as  being  forced  to pay  increased  costs  for such
replacement  manufacturing  or delays  upon  distribution  and  delivery  of our
products  to our  customers,  which  could  cause us to lose  customers  or lose
revenues because of late shipments.

If a Manufacturer Fails to Use Acceptable Labor Practices,  We Might Have Delays
in  Shipments or Face Joint  Liability  for  Violations,  Resulting in Decreased
Revenue and Increased Expenses.

         While we require our independent manufacturers to operate in compliance
with  applicable  laws and  regulations,  we have no control over their ultimate
actions.  While our internal and vendor  operating  guidelines  promote  ethical
business  practices  and our  staff and  buying  agents  periodically  visit and
monitor the operations of our independent manufacturers, we do not control these
manufacturers or their labor practices.  The violation of labor or other laws by
our  independent  manufacturers,  or by one of our  licensing  partners,  or the
divergence  of  an  independent  manufacturer's  or  licensing  partner's  labor
practices from those generally  accepted as ethical in the United States,  could
interrupt,  or  otherwise  disrupt the  shipment  of finished  products to us or
damage our  reputation.  Any of these,  in turn,  could have a material  adverse
effect on our financial condition and results of operations, such as the loss of
potential revenue and incurring additional expenses.

                                       26





Failure to License New Technologies Could Impair Sales of Our  Existing Products
or Any New Product Development We Undertake in the Future.

         To generate  broad  product  lines,  it is  advantageous  to  sometimes
license  technologies  from third parties rather than depend  exclusively on the
development efforts of our own employees. As a result, we believe our ability to
license new technologies from third parties is and will continue to be important
to our  ability to offer new  products.  In  addition,  from time to time we are
notified or become  aware of patents  held by third  parties that are related to
technologies  we are selling or may sell in the future.  After a review of these
patents, we may decide to seek a license for these technologies from these third
parties. There can be no assurance that we will be able to successfully identify
new  technologies  developed  by  others.  Even if we are able to  identify  new
technologies of interest, we may not be able to negotiate a license on favorable
terms, or at all. If we lose the rights to patented  technology,  we may need to
discontinue selling certain products or redesign our products, and we may lose a
competitive advantage.  Potential competitors could license technologies that we
fail to license and  potentially  erode our market  share for certain  products.
Intellectual   property   licenses  would   typically   subject  us  to  various
commercialization,  sublicensing,  minimum payment, and other obligations. If we
fail to comply with these  requirements,  we could lose important rights under a
license. In addition, certain rights granted under the license could be lost for
reasons beyond our control,  and we may not receive significant  indemnification
from  a  licensor   against   third  party  claims  of   intellectual   property
infringement.

Our Failure To Manage Our Growth In Operations and Acquisitions of  New  Product
Lines and New Businesses Could Harm our Business.

         Any growth in our operations,  if any, will place a significant  strain
on our current  management  resources.  To manage such growth,  we would need to
improve our:

         o        operations and financial systems;
         o        procedures and controls; and
         o        training and management of our employees.

         Our future growth,  if any, may be  attributable to acquisitions of new
product  lines  and  new  businesses.   Future  acquisitions,   if  successfully
consummated,  would likely create increased working capital requirements,  which
would  likely  precede  by  several  months  any  material  contribution  of  an
acquisition  to  our  net  income.  Our  failure  to  manage  growth  or  future
acquisitions  successfully  could  seriously harm our operating  results.  Also,
acquisition   costs  could  cause  our  quarterly   operating  results  to  vary
significantly. Furthermore, our stockholders would be diluted if we financed the
acquisitions by incurring convertible debt or issuing securities.

         Although we currently only have operations within the United States, if
we were to acquire an international  operation;  we would face additional risks,
including:

         o        difficulties  in    staffing,    managing    and   integrating
                  international operations due to language,  cultural  or  other
                  differences;
         o        different or conflicting regulatory or legal requirements;
         o        foreign currency fluctuations; and
         o        diversion of significant time and attention of our management.

Failure to Attract and Retain Qualified Scientific,  Production  and  Managerial
Personnel Could Harm Our Business.

         Recruiting and retaining qualified  scientific and production personnel
to perform and manage prototype,  sample, and product manufacturing and business
development  personnel  to conduct  business  development  are  critical  to our
success. In addition, our desired growth and expansion into areas and activities
requiring additional expertise, such as clinical testing,  government approvals,
production,  and marketing will require the addition of new management personnel
and the development of additional  expertise by existing  management  personnel.
Because  the  industry  in  which  we  compete  is  very  competitive,  we  face
significant  challenges  attracting  and retaining a qualified  personnel  base.
Although  we believe we have been and will be able to attract  and retain  these
personnel,  we may not be able to continue  to  successfully  attract  qualified
personnel.  The failure to attract and retain these personnel or, alternatively,
to develop this expertise  internally  would harm our business since our ability
to conduct business development and manufacturing will be reduced or eliminated,
resulting  in  lower  revenues.  We  generally  do  not  enter  into  employment
agreements  requiring our employees to continue in our employment for any period
of time.

                                       27





Our Intellectual Property Rights Are Valuable, and Any Inability to Protect Them
Could Reduce the Value of Our Products, Services and Brand.

         Our patents, trademarks, trade secrets, copyrights and all of our other
intellectual  property rights are important assets for us. There are events that
are  outside  of our  control  that pose a threat to our  intellectual  property
rights  as  well  as to  our  products  and  services.  For  example,  effective
intellectual  property protection may not be available in every country in which
our products and services are distributed.  The efforts we have taken to protect
our  proprietary  rights may not be  sufficient or  effective.  Any  significant
impairment of our  intellectual  property  rights could harm our business or our
ability to compete.  Protecting our  intellectual  property rights is costly and
time  consuming.  Any  increase  in the  unauthorized  use  of our  intellectual
property  could make it more  expensive  to do business  and harm our  operating
results. Although we seek to obtain patent protection for our innovations, it is
possible  we may not be able to  protect  some of these  innovations.  Given the
costs of  obtaining  patent  protection,  we may choose  not to protect  certain
innovations that later turn out to be important. There is always the possibility
that the scope of the  protection  gained from one of our issued patents will be
insufficient  or deemed  invalid  or  unenforceable.  We also  seek to  maintain
certain intellectual property as trade secrets. The secrecy could be compromised
by third parties, or intentionally or accidentally by our employees, which would
cause us to lose the competitive advantage resulting from these trade secrets.

Intellectual Property Litigation Could Harm Our Business.

         Litigation regarding patents and other intellectual  property rights is
extensive  in the  biotechnology  industry.  In  the  event  of an  intellectual
property  dispute,  we may be forced to litigate.  This litigation could involve
proceedings   instituted  by  the  U.S.  Patent  and  Trademark  Office  or  the
International  Trade  Commission,  as well as  proceedings  brought  directly by
affected  third  parties.  Intellectual  property  litigation  can be  extremely
expensive,  and  these  expenses,  as well  as the  consequences  should  we not
prevail, could seriously harm our business.

         If a third party claims an intellectual property right to technology we
use, we might need to  discontinue an important  product or product line,  alter
our products  and  processes,  pay license  fees or cease our affected  business
activities.  Although  we might under  these  circumstances  attempt to obtain a
license to this intellectual  property, we may not be able to do so on favorable
terms,  or at all.  Furthermore,  a third  party  may  claim  that we are  using
inventions  covered by the third  party's  patent  rights and may go to court to
stop us from engaging in our normal operations and activities,  including making
or selling our product  candidates.  These  lawsuits are costly and could affect
our results of operations  and divert the attention of managerial  and technical
personnel.  A court may decide that we are infringing the third party's  patents
and would order us to stop the activities covered by the patents. In addition, a
court may order us to pay the other party damages for having  violated the other
party's  patents.  The  biotechnology  industry has produced a proliferation  of
patents,  and it is not always  clear to industry  participants,  including  us,
which patents cover various types of products or methods of use. The coverage of
patents is subject to  interpretation by the courts,  and the  interpretation is
not always  uniform.  If we are sued for patent  infringement,  we would need to
demonstrate  that our  products  or methods of use  either do not  infringe  the
patent claims of the relevant  patent and/or that the patent claims are invalid,
and we may  not be  able to do  this.  Proving  invalidity,  in  particular,  is
difficult  since it  requires  a showing  of clear and  convincing  evidence  to
overcome the presumption of validity enjoyed by issued patents.

         Because some patent applications in the United States may be maintained
in secrecy  until the patents are issued,  because  patent  applications  in the
United States and many foreign  jurisdictions  are typically not published until
eighteen  months  after  filing,  and  because  publications  in the  scientific
literature often lag behind actual discoveries, we cannot be certain that others
have  not  filed  patent  applications  for  technology  covered  by  our or our
licensor's  issued patents or pending  applications  or that we or our licensors
were the first to invent the technology. Our competitors may have filed, and may
in the future file, patent applications covering technology similar to ours. Any
such patent  application  may have  priority over our or our  licensors'  patent
applications  and could further  require us to obtain  rights to issued  patents
covering  such  technologies.  If another party has filed a United States patent
application  on  inventions  similar to ours, we may have to  participate  in an
interference  proceeding  declared  by the United  States  Patent and  Trademark
Office to determine  priority of invention  in the United  States.  The costs of
these  proceedings  could be  substantial,  and it is possible that such efforts
would be unsuccessful,  resulting in a loss of our United States patent position
with respect to such inventions.

         Some of our  competitors  may be able to  sustain  the costs of complex
patent  litigation more effectively than we can because they have  substantially
greater resources.  In addition, any uncertainties resulting from the initiation
and  continuation of any litigation  could have a material adverse effect on our
ability to raise the funds necessary to continue our operations.

                                       28





Accidents Related to Hazardous Materials Could Adversely Affect Our Business.

         Some  of  our  operations  require  the  controlled  use  of  hazardous
materials.  Although we believe our safety  procedures comply with the standards
prescribed  by  federal,  state,  local  and  foreign  regulations,  the risk of
accidental  contamination  of  property  or injury  to  individuals  from  these
materials cannot be completely eliminated. In the event of an accident, we could
be liable for any damages that result, which could seriously damage our business
and results of operations.

Potential  Product  Liability  Claims  Could  Affect  Our Earnings and Financial
Condition.

         We face a potential risk of liability  claims based on our products and
services,  and we have faced  such  claims in the past.  Though we have  product
liability  insurance  coverage which we will believe is adequate,  we may not be
able to maintain this insurance at reasonable  cost and on reasonable  terms. We
also cannot assure that this insurance, if obtained, will be adequate to protect
us against a product  liability  claim,  should  one arise.  In the event that a
product liability claim is successfully brought against us, it could result in a
significant  decrease in our  liquidity  or assets,  which  could  result in the
reduction or termination of our business.

Litigation  Generally  Could  Affect  Our  Financial  Condition  and  Results of
Operations.

         We  generally  may be subject to claims made by and required to respond
to  litigation  brought by  customers,  former  employees,  former  officers and
directors,  former  distributors  and sales  representatives,  and  vendors  and
service  providers.  We have faced such claims and litigation in the past and we
cannot assure that we will not be subject to claims in the future.  In the event
that a claim is successfully brought against us, considering our lack of revenue
and the losses our business  has  incurred for the period from our  inception to
June 30, 2006,  this could result in a significant  decrease in our liquidity or
assets, which could result in the reduction or termination of our business.

We Are  Obligated to Pay  Liquidated  Damages As a Result of Our Failure to Have
this Registration  Statement  Declared Effective Prior to June 15, 2005, and any
Payment of  Liquidated  Damages  Will Either  Result in Depletion of Our Limited
Working Capital or Issuance of Shares of Common Stock Which Would Cause Dilution
to Our Existing Shareholders.

         Pursuant to the terms of a registration  rights  agreement with respect
to common stock underlying  convertible  notes and warrants we issued in private
placements  in November and  December,  2003,  December,  2004,  and January and
February,  2005, if we did not have a  registration  statement  registering  the
shares underlying these convertible notes and warrants declared  effective on or
before June 15, 2005, we are obligated to pay  liquidated  damages in the amount
of 3.5% per month of the face amount of the notes, which equals $367,885,  until
the  registration  statement  is  declared  effective.   At  our  option,  these
liquidated damages can be paid in cash or restricted shares of our common stock.
To date we have  decided to pay  certain of these  liquidated  damages in common
stock, although any future payments of liquidated damages may, at our option, be
made in cash. If we decide to pay such  liquidated  damages in cash, we would be
required to use our limited  working capital and  potentially  raise  additional
funds. If we decide to pay the liquidated damages in shares of common stock, the
number of shares issued would depend on our stock price at the time that payment
is due. Based on the closing market prices of $0.66,  $0.58, $0.70, $0.49, $0.32
and $0.20 for our common stock on July 15, 2005, August 15, 2005,  September 15,
2005, October 17, 2005,  November 15, 2005 and December 15, 2005,  respectively,
we issued a total of 3,807,375 shares of common stock in liquidated damages from
August,  2005 to  January,  2006 to persons  who  invested  in the  January  and
February, 2005 private placements. The issuance of shares upon any payment by us
of further  liquidated  damages  will have the effect of  further  diluting  the
proportionate  equity  interest and voting power of holders of our common stock,
including investors in this offering.

         We paid  liquidated  damages  in the form of common  stock only for the
period from June 15, 2005 to December 15, 2005, and only to persons who invested
in the January and February, 2005 private placements. We believe that we have no
enforceable  obligation  to pay  liquidated  damages to holders of any shares we
agreed to register under the registration rights agreement for periods after the
first  anniversary  of the date of  issuance  of such  shares,  since  they were
eligible for resale under Rule 144 of the  Securities  Act during such  periods,
and such liquidated damages are grossly inconsistent with actual damages to such
persons.  Nonetheless,  as of  September  30, we have  accrued  $4.0  million in
penalties representing further liquidated damages associated with our failure to
have the registration  statement  declared  effective by the deadline,  and have
included this amount in accounts payable and accrued expenses.

Matter Voluntarily Reported to the Securities and Exchange Commission

         During the months of March,  May,  July and  August  2005,  we issued a
total  of  8,550,000  shares  of our  common  stock  to  certain  employees  and
consultants   pursuant  to  the  2005   Incentive  Stock  Plan.  We  engaged our

                                       29





outside counsel to conduct an investigation of the circumstances surrounding the
issuance  of these  shares.  On April 26,  2006,  we  voluntarily  reported  the
findings from this  investigation to the SEC, and agreed to provide the SEC with
further information arising from the investigation. We believe that the issuance
of 8,000,000 shares to employees in July 2005 was effectuated by both our former
President and our former Chief Financial Officer/Chief Operating Officer without
approval of our board of directors.  These former  officers  received a total of
3,000,000 of these shares.  In addition,  it appears that the  8,000,000  shares
issued in July 2005, as well as an additional 550,000 shares issued to employees
and consultants in March, May and August 2005, were improperly  issued without a
restrictive legend stating that the shares could not be resold legally except in
compliance  with the  Securities  Act of 1933,  as  amended.  The members of the
Company's  management who effectuated the stock issuances no longer work for the
Company.  These shares were not registered  under the Securities Act of 1933, or
the  securities  laws of any state,  and we believe that certain of these shares
may have been sold on the open  market,  though we have been unable to determine
the  magnitude of such sales.  If  violations  of  securities  laws  occurred in
connection  with the  resale of  certain  of these  shares,  the  employees  and
consultants  or persons who  purchased  shares from them may have rights to have
their purchase  rescinded or other claims against us for violation of securities
laws,  which  could harm our  business,  results of  operations,  and  financial
condition.

Risks Relating to Our Common Stock

There Are a Large Number of Shares  Underlying Our Options and Warrants That May
be Available for Future Sale and the Sale of These Shares May Depress the Market
Price of Our Common Stock and Will Cause Immediate and  Substantial  Dilution to
Our Existing Stockholders.

         As of December  29,  2006,  we had  121,162,385  shares of common stock
issued  and  outstanding  and  outstanding  options  and  warrants  to  purchase
77,929,464  shares of common stock.  All of the shares issuable upon exercise of
our options and  warrants  may be sold  without  restriction.  The sale of these
shares may adversely  affect the market price of our common stock.  The issuance
of shares  upon  exercise  of options  and  warrants  will cause  immediate  and
substantial  dilution to the interests of other  stockholders  since the selling
stockholders may convert and sell the full amount issuable on exercise.

If We Fail to Remain Current on Our Reporting Requirements,  We Could be Removed
From the OTC Bulletin Board Which Would Limit the Ability of  Broker-Dealers  to
Sell Our Securities and the Ability of Stockholders to Sell Their  Securities in
the Secondary Market.

         Companies  trading  on The Over The  Counter  Bulletin  Board (the "OTC
Bulletin Board"),  such as us, must be reporting issuers under Section 12 of the
Securities  Exchange  Act of 1934,  as  amended,  and must be  current  in their
reports under Section 13, in order to maintain price quotation privileges on the
OTC Bulletin Board. If we fail to remain current on our reporting  requirements,
we could be  removed  from the OTC  Bulletin  Board.  As a  result,  the  market
liquidity for our securities  could be severely  adversely  affected by limiting
the  ability  of  broker-dealers  to sell  our  securities  and the  ability  of
stockholders  to sell their  securities  in the secondary  market.  Prior to May
2001, we were  delinquent in our reporting  requirements,  having failed to file
our  quarterly  and annual  reports for the years ended 1998 - 2000  (except the
quarterly  reports for the first two quarters of 1999).  We have been current in
our reporting  requirements  for the last five years,  however,  there can be no
assurance  that in the  future  we  will  always  be  current  in our  reporting
requirements.

Our  Common  Stock is  Subject  to the  "Penny  Stock"  Rules of the SEC and the
Trading Market in Our  Securities is Limited,  Which Makes  Transactions  in Our
Stock Cumbersome and May Reduce the Value of an Investment in Our Stock.

         The SEC has adopted Rule 15g-9 which  establishes  the  definition of a
"penny stock," for the purposes  relevant to us, as any equity security that has
a market  price of less than $5.00 per share or with an  exercise  price of less
than  $5.00 per  share,  subject  to  certain  exceptions.  For any  transaction
involving a penny stock, unless exempt, the rules require:

         o        that   a   broker   or   dealer approve a person's account for
                  transactions in penny stocks; and
         o        the  broker  or dealer  receive  from the  investor  a written
                  agreement to the  transaction,  setting forth the identity and
                  quantity of the penny stock to be purchased.

         In order to  approve  a  person's  account  for  transactions  in penny
stocks, the broker or dealer must:

         o        obtain  financial  information   and   investment   experience
                  objectives of the person; and
         o        make a reasonable determination that the transactions in penny
                  stocks  are  suitable  for  that  person  and the  person  has
                  sufficient knowledge and experience in financial matters to be
                  capable  of  evaluating  the  risks of  transactions  in penny
                  stocks.

                                       30





         The broker or dealer must also deliver,  prior to any  transaction in a
penny stock, a disclosure  schedule  prescribed by the SEC relating to the penny
stock market, which, in highlight form:

         o        sets forth the basis on  which  the  broker or dealer made the
                  suitability determination; and
         o        that the broker or dealer received a signed, written agreement
                  from the investor prior to the transaction.

         Generally,  brokers  may be less  willing  to execute  transactions  in
securities  subject to the "penny stock" rules.  This may make it more difficult
for  investors  to dispose of our common stock and cause a decline in the market
value of our stock.

         Disclosure  also has to be made about the risks of  investing  in penny
stocks  in  both  public  offerings  and in  secondary  trading  and  about  the
commissions payable to both the broker-dealer and the registered representative,
current  quotations for the securities and the rights and remedies  available to
an  investor  in cases of fraud in penny stock  transactions.  Finally,  monthly
statements  have to be sent  disclosing  recent price  information for the penny
stock held in the account and information on the limited market in penny stocks.

                                       31





ITEM 7.  FINANCIAL STATEMENTS.

                          APPLIED DNA SCIENCES, INC.

                         INDEX TO FINANCIAL STATEMENTS

                                                                            Page

Report of Independent Registered Public Accounting Firm                      F-1

Consolidated Balance Sheet as of September 30, 2006                          F-2

Consolidated  Statements of Losses for the years ended  September 30,
2006 and 2005 and the period  September  16, 2002 (date of inception)
to September 30, 2006                                                        F-3

Consolidated  Statement of Stockholders'  Equity (Deficiency) for the
period  September  16, 2002 (date of inception) to September 30, 2065        F-4

Consolidated  Statements of Cash Flows for the years ended  September
30,  2006  and  2005  and the  period  September  16,  2002  (date of
inception) to September 30, 2006                                            F-19

Notes to Consolidated Financial Statements                                  F-21

                                       32





                    RUSSELL BEDFORD STEFANOU MIRCHANDANI LLP
                          CERTIFIED PUBLIC ACCOUNTANTS

             REPORT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM

Board of Directors
Applied DNA Sciences, Inc.
Stony Brook, New York

         We have audited the accompanying  consolidated balance sheet of Applied
DNA Sciences,  Inc. (a  development  stage company) as of September 30, 2006 and
the related  consolidated  statements  of losses,  deficiency  in  stockholders'
equity,  and cash flows for each of the two years in the period ended  September
30, 2006 and the period September 16, 2002 (date of inception) through September
30, 2006.  These financial  statements are the  responsibility  of the company's
management.  Our  responsibility  is to  express  an  opinion  on the  financial
statements based upon our audits.

         We have conducted our audits in accordance  with auditing  standards of
the Public Company Accounting Oversight Board (United States of America).  Those
standards  require  that we plan and  perform  the  audit to  obtain  reasonable
assurance   about  whether  the  financial   statements  are  free  of  material
misstatement.  An audit includes examining on a test basis,  evidence supporting
the amounts and disclosures in the financial statements.  An audit also includes
assessing the  accounting  principles  used and  significant  estimates  made by
management,  as well as evaluating the overall financial statement presentation.
We believe our audits provide a reasonable basis for our opinion.

         In our opinion,  the  financial  statements  referred to above  present
fairly,  in all  material  respects,  the  financial  position  of  Applied  DNA
Sciences,  Inc. (a  development  stage  company) at  September  30, 2006 and the
results  of its  operations  and its cash flows for the each of the two years in
the period ended  September 30, 2006 and the period  September 16, 2002 (date of
inception)  through September 30, 2006 in conformity with accounting  principles
generally accepted in the United States of America.

         The accompanying  financial  statements have been prepared assuming the
Company  will  continue as a going  concern.  As  discussed in the Note L to the
accompanying  financial statements,  the Company is in the development stage and
has not established a source of revenues.  This raises  substantial  doubt about
the company's ability to continue as a going concern.  The financial  statements
do not  include  any  adjustments  that might  result  from the  outcome of this
uncertainty.

         As  discussed  in Note M, the Company  has  restated  the  consolidated
statements of losses, deficiency in stockholders' equity, and cash flows for the
year  ended  September  30,  2005 and the  period  September  16,  2002 (date of
inception) through September 30, 2005.

                              /s/ RUSSELL BEDFORD STEFANOU MIRCHANDANI LLP
                                  Russell Bedford Stefanou Mirchandani LLP

McLean, Virginia
January 5, 2007

                                       F-1





                           APPLIED DNA SCIENCES, INC.
                         (A Development stage company)
                           CONSOLIDATED BALANCE SHEET
                               SEPTEMBER 30, 2006




                                     ASSETS

                                                                                                
Current assets:
Cash                                                                                              $  1,225,304
Accounts receivable                                                                                      9,631
Advances and other receivables                                                                           8,419
Prepaid expenses                                                                                       106,667
                                                                                                  ------------
Total current assets                                                                                 1,350,021

Property and equipment-net of accumulated depreciation of $20,885  (Note A)                            156,437

Other assets:
Deposits                                                                                                13,822
Capitalized finance costs-net of accumulated amortization of $636,013                                1,049,087

Intangible assets:
Patients, net of accumulated amortization of $18,593 (Note B)                                           15,663
Intellectual property, net of accumulated amortization of $7,339,100 (Note B)                        2,091,800
                                                                                                  ------------
Total Assets                                                                                      $  4,676,830
                                                                                                  ============

              LIABILITIES AND DEFICIENCY IN STOCKHOLDERS' EQUITY

Current liabilities:
Accounts payable and accrued liabilities (Note C)                                                 $  5,560,032
Convertible notes payable, net of unamortized discount (Note D)                                      3,761,771
Note payable-Related Party (Note E)                                                                    410,429
                                                                                                  ------------
Total current liabilities                                                                            9,732,232

Debt derivative and warrant liability                                                                4,530,795

Commitments and contingencies (Note K)

Deficiency in Stockholders' Equity- (Note F)
Preferred stock, par value $0.001 per share; 10,000,000 shares authorized; 60,000 issued
and outstanding                                                                                              6
Common stock, par value $0.001 per share; 250,000,000 shares authorized; 120,982,385 issued
and outstanding                                                                                        120,982
Additional paid in capital                                                                          82,627,606
Accumulated deficit                                                                                (92,334,791)
                                                                                                  ------------
Total deficiency in stockholders' equity                                                            (9,586,197)

Total liabilities and Deficiency in Stockholders' Equity                                          $  4,676,830
                                                                                                  ============


See the accompanying notes to the consolidated financial statements

                                       F-2





                          APPLIED DNA SCIENCES, INC.
                         (A DEVELOPMENT STAGE COMPANY)
                       CONSOLIDATED STATEMENTS OF LOSSES



                                                                                                     From September 16, 2002
                                                            For the Year  Ended September 30,           (Date of Inception)
                                                                                     2005           Through September 30, 2006
                                                                                 -------------         --------------------
                                                              2006                (RESTATED)                (RESTATED)
                                                          -------------          -------------         --------------------
                                                                                              
Sales                                                     $      18,900          $          -          $             18,900
Cost of sales                                                    15,639                     -                        15,639
                                                          -------------          -------------         --------------------
Gross Profit                                                      3,261                     -                         3,261

Operating expenses:
Selling, general and administrative                           8,530,354             50,714,017                   80,065,959
Research and development                                        153,191                638,873                    1,030,599
Impairment of intangible asset(s)                             5,655,011                     -                     5,655,011
Depreciation and amortization                                 1,370,299                356,266                    1,729,726
                                                          -------------          -------------         --------------------

Total operating expenses                                     15,708,855             51,709,156                   88,481,295
                                                          -------------          -------------         --------------------

NET LOSS FROM OPERATIONS                                    (15,705,594)           (51,709,156)                 (88,478,034)

Net gain in revaluation of debt derivative and warrant
liabilities                                                  16,844,837             16,700,990                   33,545,827


Other income                                                     79,488                  4,957                      110,830
Interest expense                                             (3,828,968)           (32,106,310)                 (37,513,414)
                                                          -------------          -------------         --------------------

Net loss before provision for income taxes                   (2,410,237)           (67,109,519)                 (92,334,791)

Income taxes (benefit)                                                -                      -                            -
                                                          -------------          -------------         --------------------

NET LOSS                                                  $  (2,410,237)         $ (67,109,519)        $        (92,334,791)
                                                          =============          =============         ====================

Net loss per share-basic and fully diluted                $       (0.02)         $       (1.05)
                                                          =============          =============
Weighted average shares outstanding-
    Basic and fully diluted                                 116,911,022             63,917,009
                                                          -------------          -------------


See the accompanying notes to the consolidated financial statements

                                       F-3



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Issuance of
common stock
to Founders in
exchange for
services on
September 16,
2002 at $.01
per share           --         --         100,000  $        10  $       990  $      --    $       --    $       --    $      1,000

Net Loss            --         --            --           --           --           --            --         (11,612)      (11,612)

Balance at
September 30,
2002                --    $    --         100,000  $        10  $       990  $      --    $       --    $    (11,612) $    (10,612)
               =========  =========  ============  ===========  ===========  ===========  ============  ============  ============
Issuance of
common stock
in connection
with merger
with Prohealth
Medical
Technologies,
Inc on October
1, 2002             --         --      10,178,352        1,015         --           --            --            --           1,015

Cancellation of
Common stock in
connection with
merger with
Prohealth
Medical
Technologies,
Inc on October
21, 2002            --         --        (100,000)         (10)      (1,000)        --            --            --          (1,010)

Issuance of
common stock
in exchange for
services in
October 2002 at
$0.65 per share     --         --         602,000           60       39,070         --            --            --          39,130

Issuance of
common stock
in exchange for
subscription in
November and
December 2002
at $0.065 per
share               --         --         876,000           88       56,852         --         (56,940)         --            --

Cancellation of
common stock in
January 2003
previously
issued in
exchange for
consulting
services            --         --        (836,000)         (84)     (54,264)        --          54,340          --              (8)

Issuance of
common stock
in exchange for
licensing
services valued
at $0.065 per
share in
January 2003        --         --       1,500,000          150       97,350         --            --            --          97,500

Issuance of
common stock
in exchange for
consulting
services valued
at $0.13 per
share in
January 2003        --         --         586,250           58       76,155         --            --            --          76,213

Issuance of
common stock
in exchange for
consulting
services at
$0.065 per
share in
February 2003       --         --           9,000            1          584         --            --            --             585


                                      F-4



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                         Deficit
                                                                 Additional                             Accumulated
                          Preferred                   Common      Paid in      Common        Stock        During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           

Issuance of
common stock
to Founders in
exchange for
services valued
at $0.0001 per
share in
March 2003          --         --      10,140,000        1,014         --           --            --            --           1,014

Issuance of
common stock
in exchange for
consulting
services valued
at $2.50 per
share in March
2003                --         --          91,060           10      230,624         --            --            --         230,634

Issuance of
common stock
in exchange for
consulting
services valued
at $0.065 per
share in March
2003                --         --           6,000            1          389         --            --            --             390

Common stock
subscribed in
exchange for
cash at $1 per
share in March
2003                --         --            --           --         18,000         --            --            --          18,000

Common stock
issued in
exchange for
consulting
services at
$0.065 per
share on April
1, 2003             --         --         860,000           86       55,814         --            --            --          55,900

Common stock
issued in
exchange for
cash at $1.00
per share on
April 9, 2003       --         --          18,000            2         --           --            --            --               2

Common stock
issued in
exchange for
consulting
services at
$0.065 per
share on April
9, 2003             --         --           9,000            1          584         --            --            --             585

Common stock
issued in
exchange for
consulting
services at
$2.50 per
share on April
23, 2003            --         --           5,000            1       12,499         --            --            --          12,500

Common stock
issued in
exchange for
consulting
services at
$2.50 per
share, on June
12, 2003            --         --          10,000            1       24,999         --            --            --          25,000

Common stock
issued in
exchange for
cash at $1.00
per share on
June 17, 2003       --         --          50,000            5       49,995         --            --            --          50,000

Common stock
subscribed in
exchange for
cash at $2.50
per share
pursuant to
private
placement on
June 27, 2003       --         --            --           --           --         24,000          --            --          24,000


                                      F-5



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common stock
retired in
exchange for
note payable at
$0.0118 per
share, in June
30, 2003            --         --      (7,500,000)        (750)         750         --            --            --            --

Common stock
issued in
exchange for
consulting
services at
$0.065 per
share, on June
30, 2003            --         --         270,000           27       17,523         --            --            --          17,550

Common stock
subscribed in
exchange for
cash at $1.00
per share
pursuant to
private
placement on
June 30, 2003       --         --            --           --           --         10,000          --            --          10,000

Common stock
subscribed in
exchange for
cash at $2.50
per share
pursuant to
private
placement on
June 30, 2003       --         --            --           --           --         24,000          --            --          24,000

Common stock
issued in
exchange for
consulting
services at
approximately
$2.01 per
share, July
2003                --         --         213,060           21      428,798         --            --            --         428,819

Common stock
canceled in
July 2003,
previously
issued for
services
rendered at
$2.50 per share     --         --         (24,000)          (2)     (59,998)        --            --            --         (60,000)

Common stock
issued in
exchange for
options
exercised at
$1.00 per
share in July
2003                --         --          20,000            2       19,998         --            --            --          20,000

Common stock
issued in
exchange for
exercised of
options
previously
subscribed at
$1.00 per
share in July
2003                --         --          10,000            1        9,999      (10,000)         --            --            --

Common stock
issued in
exchange for
consulting
services at
approximately
$2.38 per
share, August
2003                --         --         172,500           17      410,915         --            --            --         410,932

Common stock
issued in
exchange for
options
exercised at
$1.00 per
share in August
2003                --         --          29,000            3       28,997         --            --            --          29,000

Common stock
issued in
exchange for
consulting
services at
approximately
$2.42 per
share,
September 2003      --         --         395,260           40      952,957         --            --            --         952,997


                                      F-6



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common stock
issued in
exchange for
cash at $2.50
per share-
subscription
payable-
September 2003      --         --          19,200            2       47,998      (48,000)         --            --            --

Common stock
issued in
exchange for
cash at $2.50
per share
pursuant
to private
placement
September 2003      --         --           6,400            1       15,999         --            --            --          16,000

Common stock
issued in
exchange for
options
exercised at
$1.00 per
share in
September 2003      --         --          95,000           10       94,991         --            --            --          95,001

Common stock
subscriptio
receivable
reclassificat
adjustment          --         --            --           --           --           --           2,600          --           2,600

Common Stock
subscribed to
at $2.50 per
share in
September 2003      --         --            --           --           --        300,000          --            --         300,000

Net Loss for
the year ended
September 30,
2003                --         --            --           --           --           --            --      (3,445,164)   (3,445,164)

               ---------  ---------  ------------  -----------  -----------  -----------  ------------  ------------  ------------
Balance at
September 30,
2003                --    $    --      17,811,082  $     1,781  $ 2,577,568  $   300,000  $       --    $ (3,456,776) $   (577,427)
               =========  =========  ============  ===========  ===========  ===========  ============  ============  ============

Preferred
shares issues
in exchange for
services at
$25.00 per
share,
October 2003      15,000         15          --           --           --           --            --            --              15

Common stock
issued in
exchange for
consulting
services at
approximately
$2.85 per
share, October
2003                --         --         287,439           29      820,389         --            --            --         820,418

Common stock
issued in
exchange  for
cash at $2.50
per share-
subscription
payable-
October 2003        --         --         120,000           12      299,988     (300,000)         --            --            --

Common stock
canceled in
October 2003,
previously
issued for
services
rendered at
$2.50 per
share               --         --        (100,000)         (10)    (249,990)        --            --            --        (250,000)

Common stock
issued in
exchange for
consulting
services at
approximately
$3 per share,
November 2003       --         --         100,000           10      299,990         --            --            --         300,000



                                      F-7



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common stock
subscribed
in exchange for
cash at $2.50
per share
pursuant
to private
placement,
November, 2003      --         --         100,000           10      249,990         --            --            --         250,000

Common stock
subscribed
in exchange for
cash at $2.50
per share
pursuant to
private
placement,
December, 2003      --         --           6,400            1       15,999         --            --            --          16,000

Common stock
issued in
exchange for
consulting
services at
approximately
$2.59 per
share, December
2003                --         --       2,125,500          213    5,504,737         --            --            --       5,504,950

Common Stock
subscribed
to at $2.50 per
share in
December 2003       --         --            --           --           --        104,000          --            --         104,000

Beneficial
conversion
feature
relating to
notes payable       --         --            --           --      1,168,474         --            --            --       1,168,474

Beneficial
conversion
feature
relating to
warrants            --         --            --           --        206,526         --            --            --         206,526

Adjust common
stock par value
from $0.0001 to
$0.50 per
share, per
amendment of
articles dated
in December 200     --         --            --     10,223,166  (10,223,166)        --            --            --            --

Common Stock
issued pursuant
to subscription
at $2.50 share
in January 2004     --         --          41,600       20,800       83,200     (104,000)         --            --            --

Common stock
issued in
exchange for
consulting
services at
$2.95 per
share, January
2004                --         --          13,040        6,520       31,948         --            --            --          38,468

Common stock
issued in
exchange for
consulting
services at
$2.60 per
share, January
2004                --         --         123,000       61,500      258,300         --            --            --         319,800

Common stock
issued in
exchange for
consulting
services at
$3.05 per
share, January
2004                --         --           1,000          500        2,550         --            --            --           3,050

Common stock
issued in
exchange for
employee
services at
$3.07 per
share, February
2004                --         --           6,283        3,142       16,147         --            --            --          19,289

Common stock
issued in
exchange for
consulting
services at
$3.04 per
share, March
2004                --         --          44,740       22,370      113,640         --            --            --         136,010

Common Stock
issued for
options
exercised at
$1.00 per share
in March 2004       --         --          55,000       27,500       27,500         --            --            --          55,000



                                      F-8



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common stock
issued in
exchange for
employee
services at
$3.00 per
share, March
2004                --         --           5,443        2,722       13,623         --            --            --          16,345

Common stock
issued in
exchange for
employee
services at
$3.15 per
share, March
2004                --         --           5,769        2,885       15,292         --            --            --          18,177

Preferred
shared
converted to
common shares
for consulting
services at
$3.00 per
share, March
2004              (5,000)        (5)      125,000       62,500      312,500         --            --            --         374,995

Common stock
issued in
exchange for
employee
services at
$3.03 per
share, March
2004                --         --           8,806        4,400       22,238         --            --            --          26,638

Common Stock
issued pursuant
to subscription
at $2.50 per
share in
March 2004          --         --          22,500       11,250       (9,000)        --            --            --           2,250

Beneficial
Conversion
Feature
relating to
Notes Payable       --         --         122,362         --           --           --         122,362

Beneficial
Conversion
Feature
relating to
Warrants            --         --            --           --        177,638         --            --            --         177,638

Common stock
issued in
exchange for
consulting
services at
$2.58 per
share,
April 2004          --         --           9,860        4,930       20,511         --            --            --          25,441

Common stock
issued in
exchange for
consulting
services at
$2.35 per
share,
April 2004          --         --          11,712        5,856       21,667         --            --            --          27,523

Common stock
issued in
exchange for
consulting
services at
$1.50 per
share,
April 2004          --         --         367,500      183,750      367,500         --            --            --         551,250

Common stock
returned to
treasury at
$0.065 per
share,
April 2004          --         --         (50,000)     (25,000)      21,750         --            --            --          (3,250)

Preferred
stock converted
to common stock
for consulting
services at
$1.01 per share
in May 2004       (4,000)        (4)      100,000       50,000       51,250         --            --            --         101,246

Common stock
issued per
subscription
May 2004            --         --          10,000        5,000       (4,000)        --          (1,000)         --            --

Common stock
issued in
exchange for
consulting
services at
$0.86 per
share in
May 2004            --         --         137,000       68,500       50,730         --            --            --         119,230



                                      F-9



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common stock
issued in
exchange for
consulting
services at
$1.15 per
share in
May 2004            --         --          26,380       13,190       17,147         --            --            --          30,337

Common stock
returned to
treasury at
$0.065 per
share,
June 2004           --         --          (5,000)      (2,500)       2,175         --            --            --            (325)

Common stock
issued in
exchange for
consulting
services at
$0.67 per
share in
June 2004           --         --         270,500      135,250       45,310         --            --            --         180,560

Common stock
issued in
exchange for
consulting
services at
$0.89 per
share in
June 2004           --         --           8,000        4,000        3,120         --            --            --           7,120

Common stock
issued in
exchange for
consulting
services at
$0.65 per
share in
June 2004           --         --          50,000       25,000        7,250         --            --            --          32,250

Common stock
issued pursuant
to private
placement at
$1.00 per share
in June 2004        --         --         250,000      125,000      125,000         --            --            --         250,000

Common stock
issued in
exchange for
consulting
services at
$0.54 per share
in July 2004        --         --         100,000       50,000        4,000         --            --            --          54,000

Common stock
issued in
exchange for
consulting
services at
$0.72 per share
in July 2004        --         --           5,000        2,500        1,100         --            --            --           3,600

Common stock
issued in
exchange for
consulting
services at
$0.47 per share
in July 2004        --         --         100,000       50,000       (2,749)        --            --            --          47,251

Common stock
issued in
exchange for
consulting
services at
$0.39 per share
in August 2004      --         --         100,000       50,000      (11,000)        --            --            --          39,000

Preferred stock
converted to
common stock
for consulting
services at
$0.39 per share
in August 2004    (2,000)        (2)       50,000       25,000       (5,500)        --            --            --          19,498

Common stock
issued in
exchange for
consulting
services at
$0.50 per share
in August 2004      --         --         100,000       50,000          250         --            --            --          50,250

Common stock
issued in
exchange for
consulting
services at
$0.56 per share
in August 2004      --         --         200,000      100,000       12,500         --            --            --         112,500



                                      F-10



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common stock
issued in
exchange for
consulting
services at
$0.41 per share
in August 2004      --         --          92,500       46,250       (8,605)        --            --            --          37,645

Common stock
issued in
exchange for
consulting
services at
$0.52 per share
in September
2004                --         --       1,000,000      500,000       17,500         --            --            --         517,500

Common stock
issued in
exchange for
consulting
services at
$0.46 per share
in September
2004                --         --           5,000        2,500         (212)        --            --            --           2,288

Common stock
issued pursuant
to subscription
at $0.50 per
share in
September 2004      --         --          40,000       20,000         --           --            --            --          20,000

Preferred
shares
converted to
common stock
for consulting
services at
$0.41 per share
in September
2004              (4,000)        (4)      100,000       50,000        4,000         --            --            --          53,996

Preferred
shares issued
in exchange for
service at $25
per share in
September 2004    60,000          6          --           --      1,499,994         --            --            --       1,500,000

Fair value of
2,841,000
warrants issued
to non
employees and
consultants for
services
rendered at
approximately
$0.71 per
warrant in
September 200       --         --            --           --      2,019,862         --            --            --       2,019,862

Net Loss            --         --            --           --           --           --            --     (19,358,258)  (19,358,258)
               ---------  ---------  ------------  -----------  -----------  -----------  ------------  ------------  ------------
Balance at
September 30,
2004              60,000  $       6    23,981,054  $11,990,527  $ 6,118,993  $      --    $     (1,000) $(22,815,034) $ (4,706,508)
               =========  =========  ============  ===========  ===========  ===========  ============  ============  ============

Common stock
issued in
exchange for
consulting
services at
$0.68 per share
in October 2004     --         --         200,000      100,000       36,000         --            --            --         136,000

Common stock
returned to
treasury at
$0.60 per share
in October 2004     --         --      (1,069,600)    (534,800)    (107,297)        --            --            --        (642,097)

Common stock
issued in
exchange for
consulting
services at
$0.60 per share
in October 2004     --         --          82,500       41,250        8,250         --            --            --          49,500



                                      F-11



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common Stock
issued pursuant
to subscription
at $0.60 per
share in
October 2004        --         --         500,000      250,000       50,000     (300,000)         --            --            --

Common stock
issued in
exchange for
consulting
services at
$0.50 per share
in October 2004     --         --         532,500      266,250         --           --            --            --         266,250

Common Stock
issued in
exchange for
debt at $0.50
per share in
October 2004        --         --         500,000      250,000         --           --            --            --         250,000

Common Stock
issued pursuant
to subscription
at $0.45 per
share in
October 2004        --         --       1,000,000      500,000      (50,000)    (450,000)         --            --            --

Common stock
issued in
exchange for
consulting
services at
$0.45 per share
in October 2004     --         --         315,000      157,500      (15,750)        --            --            --         141,750

Common Stock
issued in
exchange for
consulting
services at
$0.47 per share
in November
2004                --         --         100,000       50,000       (3,000)        --            --            --          47,000

Common Stock
issued in
exchange for
consulting
services at
$0.80 per share
in November
2004                --         --         300,000      150,000       90,000         --            --            --         240,000

Common Stock
issued in
exchange for
consulting
services at
$1.44 per share
in November 200     --         --         115,000       57,500      108,100         --            --            --         165,600

Common Stock
issued in
exchange for
employee
services at
$1.44 per share
in November
2004                --         --           5,000        2,500        4,700         --            --            --           7,200

Warrants
exercised at
$0.60 per share
in November
2004                --         --          60,000       30,000        6,000       (4,000)         --            --          32,000

Beneficial
Conversion
discount
relating to
Notes Payable       --         --            --           --      1,465,000         --            --            --       1,465,000

Common stock
issued at
$0.016 per
share in
exchange for
note payable in
December 2004       --         --       5,500,000    2,750,000   (2,661,500)        --            --            --          88,500

Common stock
issued in
settlement of
debt at $0.50
per share in
December 2004       --         --       2,930,000    1,465,000         --       (125,000)         --            --       1,340,000



                                      F-12



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Fair value of
6,063,500
warrants issued
to non employee
and consultants
for services
rendered at
$0.52 per
warrant in
October and
December 2004       --         --            --           --      3,169,052         --            --            --       3,169,052

Warrants
exercised at
$0.10 per share
in January 2005     --         --          25,000       12,500      (10,000)        --            --            --           2,500

Common Stock
issued in
settlement of
debt at $0.33
per share in
January 2005        --         --       1,628,789      814,395     (276,895)        --            --            --         537,500

Warrants
exercised at
$0.10 per share
in January 2005     --         --          17,500        8,750       (7,000)        --            --            --           1,750

Common Stock
issued in
settlement of
debt at $0.33
per share in
January 2005        --         --       2,399,012    1,199,504     (407,830)        --            --            --         791,674

Common Stock
issued in
exchange fo
consulting
services at
$1.30 per share
in January 2005     --         --         315,636      157,818      252,508         --            --            --         410,326

Fair value of
warrant
liability
reclassed due
to registration
rights granted
in February
2005                --         --            --           --     (3,108,851)        --            --            --      (3,108,851)

Common Stock
issued in
exchange for
consulting
services at
$1.44 per share
in February 200     --         --       5,796,785    2,898,393    5,418,814         --            --            --       8,317,207

Fair value of
55,000 warrants
issued to
consultants for
services at
$1.31 per
warrant in
February 2005       --         --            --           --         72,017         --            --            --          72,017



                                      F-13



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common Stock
issued in
settlement of
debt at $0.33
per share in
February 2005       --         --          75,757       37,879      (12,879)        --            --            --          25,000

Warrants
exercised at
$0.10 per share
in February
2005                --         --          20,000       10,000       (8,000)        --            --            --           2,000

Common Stock
issued in
settlement of
debt at $0.33
per share in
February 2005       --         --         606,060      303,030     (103,030)        --            --            --         200,000

Warrants
exercised at
$0.10 per share
in February
2005                --         --          45,000       22,500      (18,000)        --            --            --           4,500

Common Stock
issued in
exchange for
related party
debt at $1.31
per share in
February 2005       --         --       1,500,000      750,000    1,215,000         --            --            --       1,965,000

Common Stock
issued in
settlement of
debt at $0.33
per share in
February 2005       --         --         278,433      139,217      (47,334)        --            --            --          91,883

Common Stock
issued in
exchange for
consulting
services at
$1.17 per share
in February 200     --         --          17,236        8,618       11,548         --            --            --          20,166

Common stock
issued in
exchange for
debt at $0.50
per share in
February 2005       --         --         300,000      150,000         --           --            --            --         150,000

Common Stock
issued in
exchange for
consulting
services at
$0.95 per share
in February
2005                --         --         716,500      358,250      322,425         --            --            --         680,675

Common Stock
issued in
exchange for
consulting
services at
$0.95 per share
in February
2005                --         --          10,500        5,250        4,725         --            --            --           9,975

Common stock
issued in
exchange for
debt at $0.50
per share in
March 2005          --         --      13,202,000    6,601,000         --           --            --            --       6,601,000

Common Stock
issued in
exchange for
consulting
services at
$1.19 per share
in March 2005       --         --         185,000       92,500      127,650         --            --            --         220,150

Options
exercised at
$0.60 per share
in March 2005       --         --         100,000       50,000       10,000         --            --            --          60,000

Common Stock
issued in
exchange for
consulting
services at
$0.98 per share
in March 2005       --         --       1,675,272      837,636      804,131         --            --            --       1,641,767

Common Stock
issued in
exchange for
consulting
services at
$0.92 per share
in March 2005       --         --          24,333       12,167       10,219         --            --            --          22,386

Common Stock
issued in
exchange for
consulting
services at
$0.99 per share
in March 2005       --         --          15,000        7,500        7,350         --            --            --          14,850

Common stock
issued in
exchange for
debt at $0.50
per share in
March 2005          --         --       1,240,000      620,000         --           --            --            --         620,000

Common stock
canceled for
shares issued
in exchange of
debt in
March 2005          --         --        (500,000)    (250,000)        --           --            --            --        (250,000)



                                      F-14



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common stock
subscribed
Canceled in
March 2005          --         --            --           --           --        750,000          --            --         750,000

Common Stock
issued in
exchange for
consulting
services at
$0.89 per share
in March 2005       --         --          10,000        5,000        3,900         --            --            --           8,900

Adjust common
stock par value
from $0.50 to
$0.001 per
share, per
amendment of
articles
dated March-05      --         --            --    (32,312,879)  32,312,879         --            --            --            --

Beneficial
Conversion
discount
relating to
Notes Payable
in March 2005       --         --            --           --      7,371,000         --            --            --       7,371,000

Stock options
granted to
employees in
exchange for
services
rendered, at
exercise price
below fair
value of common
stock in March
2005                --         --            --           --        180,000         --            --            --         180,000

Common Stock
issued in
exchange for
consulting
services at
$0.80 per
share in April
2005                --         --         160,000          160      127,840         --            --            --         128,000

Common Stock
issued in
exchange for
consulting
services at
$0.80 per
share in April
2005                --         --          40,000           40       31,960         --            --            --          32,000

Common Stock
issued in
exchange for
consulting
services at
$0.75 per share
in April 2005       --         --         850,000          850      636,650         --            --            --         637,500

Common Stock
issued in
exchange for
consulting
services at
$0.33 per share
in April 2005       --         --         500,000          500      164,500         --            --            --         165,000

Common Stock
canceled during
April 2005,
previously
issued for
services
rendered at
$3.42 per share     --         --         (10,000)         (10)     (34,190)        --            --            --         (34,200)

Common Stock
issued in
settlement of
debt at $0.33
per share in
April 2005          --         --          75,758           77       24,923      (25,000)         --            --            --

Common Stock
issued in
exchange for
consulting
services at
$0.68 per share
in April 2005       --         --          50,000           50       33,950         --            --            --          34,000

Proceeds
received
against
subscription
Payable in June
2005                --         --            --           --           --        118,000          --            --         118,000



                                      F-15



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common Stock
canceled in
June 2005,
previously
issued for
services
rendered at
$0.50 per share     --         --         (10,000)         (10)      (4,990)        --            --            --          (5,000)

Cancellation of
previously
granted stock
options granted
to employees
for services
rendered, at
exercise
price below
fair value
of common stock     --         --            --           --       (180,000)        --            --            --        (180,000)

Common Stock
issued in
exchange for
consulting
services at
$0.60 per share
in July 2005        --         --         157,000          157       94,043         --            --            --          94,200

Common Stock
issued in
exchange for
intellectua
property at
$0.67 per share
in July 2005        --         --      36,000,000       36,000   24,084,000         --            --            --      24,120,000

Common Stock
issued in
exchange for
consulting
services at
$0.60 per share
in July 2005        --         --         640,000          640      383,360         --            --            --         384,000

Common Stock
issued in
exchange for
employee
services at
$0.48 per share
in July 2005        --         --       8,000,000        8,000    3,832,000         --            --            --       3,840,000

Common Stock
issued in
exchange for
consulting
services at
$0.94 per share
in July  2005       --         --         121,985          121      168,217         --            --            --         168,338

Common Stock
issued in
exchange for
consulting
services at
$0.48 per share
in August 2005      --         --         250,000          250      119,750         --            --            --         120,000

Common Stock
penalty shares
issued pursuant
to pending SB-2
registration at
$0.62 per share
in September
2005                --         --         814,158          814      501,858         --            --            --         502,672

Common Stock
penalty shares
issued pursuant
to pending SB-2
registration at
$0.70 per share
in September
2005                --         --         391,224          391      273,466         --            --            --         273,857

Common Stock
issued in
exchange for
consulting
services at
$0.94 per share
in September
2005                --         --         185,000          185      173,715         --            --            --         173,900



                                      F-16



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common Stock
returned in
September 2005,
previously
issued for
services
rendered at
$0.40 per share     --         --        (740,000)        (740)    (453,232)      56,000         1,000          --        (396,972)

Net Loss            --         --            --           --           --           --            --     (67,109,519)  (67,109,519)
               ---------  ---------  ------------  -----------  -----------  -----------  ------------  ------------  ------------
Balance as of
September
30, 2005          60,000  $       6   112,230,392  $   112,230  $82,320,715  $    20,000  $       --    $(89,924,553) $ (7,471,602)
               =========  =========  ============  ===========  ===========  ===========  ============  ============  ============

Common stock
issued in
exchange for
services at
$0.50 per share
in October 2005     --         --         400,000          400      199,600         --            --            --         200,000

Common Stock
issued in
exchange for
consulting
services at
$0.75 per share
in October 2005     --         --         100,000          100       74,900         --            --            --          75,000

Common Stock
returned in
October 2005,
previously
issued for
services
rendered at
$0.60 per share     --         --        (350,000)        (350)    (209,650)        --            --            --        (210,000)

Common stock
issued pursuant
to subscription
at $0.50 per
share in
December 2005       --         --          40,000           40       19,960      (20,000)         --            --            --

Common Stock to
investors
pursuant to
registration
rights
agreement at
$0.51 per
share in
December 2005       --         --         505,854          506      257,480         --            --            --         257,986

Common Stock
returned in
January  2006,
previously
issued for
services
rendered at
$0.60 per share     --         --        (250,000)        (250)    (149,750)        --            --            --        (150,000)

Common Stock
issued to
investors
pursuant to
registration
rights
agreement at
$0.32 per share
in January 2006     --         --         806,212          806      257,182         --            --            --         257,988

Common Stock
issued to
investors
pursuant to
registration
rights
agreement at
$0.20 per share
in January 2006     --         --       1,289,927        1,290      256,695         --            --            --         257,985

Fair value of
200,000
warrants issued
to consultants
for services
at $0.22 per
warrant in
January  2006       --         --            --           --         43,098         --            --            --          43,098



                                      F-17



                                                APPLIED DNA SCIENCES, INC
                                              (A development stage company)
                         CONDENSED CONSOLIDATED STATEMENT OF STOCKHOLDER'S EQUITY, (DEFICIENCY)
                    FOR THE PERIOD SEPTEMBER 16, 2002 (DATE OF INCEPTION) THROUGH SEPTEMBER 30, 2006

                                                                                                          Deficit
                                                                 Additional                              Accumulated
                          Preferred                   Common      Paid in      Common        Stock         During
               Preferred   Shares       Common        Stock       Capital      Stock      Subscription  Development
                Shares     Amount       Shares        Amount      Amount     Subscribed    Receivable      Stage          Total
               ---------  ---------  ------------  -----------  -----------  ----------   ------------  ------------  ------------
                                                                                           
Common Stock
issued in
exchange for
consulting
services at
$0.17 per share
in February
2006                --         --         160,000          160       27,040         --            --            --          27,200

Common Stock
issued in
exchange for
consulting
services at
$0.16 per share
in February
2006                --         --       3,800,000        3,800      604,200         --            --            --         608,000

Common Stock
returned in
March  2006,
previously
issued for
services
rendered at
$0.80 per share     --         --        (150,000)        (150)    (119,850)        --            --            --        (120,000)

Previously
issued
warrants
reclassed to
warrant
liability           --         --            --           --     (1,584,614)        --            --            --      (1,584,614)

Common Stock
issued in
exchange for
consulting
services at
$0.20 per share
in July 2006        --         --       2,400,000        2,400      477,600         --            --            --         480,000

Fair value of
stock options
granted to
employees in
exchange for
services
rendered in
September 2006      --         --            --           --        153,000         --            --            --         153,000

Net loss            --         --            --           --           --           --            --      (2,410,237)   (2,410,237)
               ---------  ---------  ------------  -----------  -----------  -----------  ------------  ------------  ------------
Balance as of
September
30, 2006        60,000    $       6  $120,982,385  $   120,982  $82,627,606  $      --    $       --    $(92,334,791) $ (9,586,197)
               =========  =========  ============  ===========  ===========  ===========  ============  ============  ============


See accompanying notes to consolidated financial statements

                                      F-18



                          APPLIED DNA SCIENCES, INC
                         (A DEVELOPMENT STAGE COMPANY)
                      CONSOLIDATED STATEMENT OF CASH FLOWS



                                                                                                                   For the Period
                                                                                                                 September 16, 2002
                                                                                                                (Date of Inception)
                                                                         For the year ended September 30,              through
                                                                                                 2005            September 30, 2006
                                                                                             ------------          --------------
                                                                             2006             (RESTATED)             (RESTATED)
                                                                         -----------         ------------          --------------
                                                                                                        
Cash flows from operating activities:
Net loss                                                                 $(2,410,237)        $(67,109,519)         $ (92,334,791)
Adjustments to reconcile net loss to net used in operating activities:
Depreciation and amortization                                              1,370,299              356,266              1,729,726
Organization expenses                                                              -                    -                 88,500
Impairment of intangible assets                                            5,655,011                    -              5,655,011
Preferred shares issued in exchange for services                                   -                    -              1,500,000
Options and warrants issued in exchange for services rendered              1,622,825            7,358,568             11,001,255
Income attributable to re pricing of warrants and debt derivatives       (16,844,837)         (16,700,991)           (33,545,828)
Financing costs attributable to issuance of warrants                       2,271,000           23,148,214             25,419,214
Amortization of beneficial conversion feature-convertible notes                    -            8,836,000             10,461,000
Amortization of capitalized financing costs                                  636,013                    -                636,013
Amortization of debt discount attributable to convertible debentures         731,490                    -                731,490
Debt in exchange for common stock at fair market price                             -            1,365,000              1,365,000
Common stock issued in exchange for services rendered                      1,390,200           18,176,641             31,964,573
Common stock exchanged for intellectual property in connection with
costs of acquiring intangible assets                                               -           14,689,100             14,689,100
Common stock issued in connection with penalties pursuant to
registration                                                                 773,958              776,529              1,550,487
Common stock canceled-previously issued for services rendered               (480,000)            (578,270)            (1,343,845)
Change in assets and liabilities:
Increase in accounts receivable                                               (5,621)             (12,429)               (18,050)
Increase in prepaid expenses and deposits                                   (106,667)               9,297               (120,929)
Decrease in other assets                                                         440                    -                (13,450)
Decrease in due related parties                                                    -             (111,943)                40,753
Increase (decrease) in accounts payable and accrued liabilities            2,512,312              657,589              4,925,610
                                                                         -----------         ------------          --------------
Net cash used in operating activities                                     (2,883,815)          (9,139,948)           (15,619,161)

Cash flows from investing activities:
Payments for patent filing                                                         -               (4,347)               (25,698)
Acquisition (disposal) of property and equipment, net                       (164,571)              16,757               (177,321)
                                                                         -----------         ------------          --------------
Net cash provided by (used in) investing activities                         (164,571)              12,410               (203,019)


See the accompanying notes to the consolidated financial statements


                                      F-19



                          APPLIED DNA SCIENCES, INC
                        (A DEVELOPMENT STAGE COMPANY)
                     CONSOLIDATED STATEMENT OF CASH FLOWS



                                                                                                                 For the Period
                                                                                                               September 16, 2002
                                                                                                              (Date of Inception)
                                                                For the year ended September 30,                    through
                                                                                          2005                September 30, 2006
                                                                                     ------------               ---------------
                                                                  2006                (RESTATED)                   (RESTATED)
                                                              -----------            ------------               ---------------
                                                                                                       
Cash flows from financing activities:
Proceeds from sale of common stock, net of cost                         -                       -                       432,000
Proceeds from issuance of convertible notes                     4,242,500               9,079,000                    13,446,500
Proceeds from sale of options                                           -                 102,750                       343,750
Repayment of debt                                                       -                 (24,854)                      (24,854)
Proceeds from loans                                                     -                       -                     2,750,000
Advances from shareholders                                              -                       -                       100,088
                                                              -----------            ------------               ---------------
Net cash provided by financing activities                       4,242,500               9,156,896                    17,047,484


Net increase in cash and cash equivalents                       1,194,114                  29,358                     1,225,304
Cash and cash equivalents at beginning of period                   31,190                   1,832                             -
                                                              -----------            ------------               ---------------
Cash and cash equivalents at end of period                    $ 1,225,304            $     31,190               $     1,225,304
                                                              ===========            ============               ===============

Supplemental Disclosures of Cash Flow Information:
Cash paid during period for interest                                    -                       -                             -
Cash paid during period for taxes                                       -                       -                             -

Non-cash transactions:
Common stock issued for services                                1,390,200              18,176,641                    31,964,573
Common stock issued in exchange for intellectual property               -               9,430,900
Common stock issued in exchange for previously incurred debt            -               3,109,533                     2,313,500
Common stock canceled-previously issued for services rendered    (480,000)               (578,270)                   (1,343,845)
Common stock issued for ESOP shares                                                     3,960,000
Common stock penalty shares issued pursuant to Pending SB-2
registration                                                                              776,529
Amortization of beneficial conversion feature                                           8,836,000                    10,461,000
Preferred shares in exchange for service at $25 per share in
September 2004                                                          -                       -                     1,500,000
Fair value of options and warrants issued to consultants for
services                                                         1,622,825              7,358,568                    10,848,255

Acquisition:
Common stock retained                                                   -                   1,015                         1,015
Assets acquired                                                         -                    (135)                         (135)
                                                              -----------            ------------               ---------------
Total consideration paid                                                -                     880                           880
                                                              -----------            ------------               ---------------

Organizational expenses-note issued in exchange for shares retired                                                       88,500
Common stock issued in exchange for note payable                                                                         88,500


See the accompanying notes to the consolidated financial statements


                                      F-20



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE A -- SUMMARY OF ACCOUNTING POLICIES

A summary of the significant  accounting  policies applied in the preparation of
the accompanying financial statements follows.

Business and Basis of Presentation

On  September  16,  2002,  Applied  DNA  Sciences,   Inc.  (the  "Company")  was
incorporated  under  the laws of the  State of  Nevada.  The  Company  is in the
development stage, as defined by Statement of Financial Accounting Standards No.
7 ("SFAS No. 7") and its efforts have been principally devoted to developing DNA
embedded  biotechnology  security  solutions in the United States.  To date, the
Company has generated  nominal  sales  revenues,  has incurred  expenses and has
sustained  losses.  Consequently,  its  operations  are subject to all the risks
inherent in the establishment of a new business enterprise.  For the period from
inception  through  September 30, 2006,  the Company has  accumulated  losses of
$92,334,791.

The consolidated  financial  statements  include the accounts of the Company and
its  wholly-owned  subsidiary,  Applied  DNA  Operations  Management,  Inc.  All
significant  intercompany  balances and  transactions  have been  eliminated  in
consolidation.

Estimates

The preparation of the financial statement in conformity with generally accepted
accounting principles requires management to make estimates and assumptions that
affect certain  reported amounts and  disclosures.  Accordingly,  actual results
could differ from those estimates.

Revenue Recognition

The Company recognizes revenue in accordance with SEC Staff Accounting  Bulletin
No. 101,  "Revenue  Recognition in Financial  Statements"  ("SAB 101").  SAB 101
requires that four basic  criteria must be met before  revenue can be recognized
:(1) persuasive  evidence of an arrangement  exists;  (2) delivery has occurred;
(3) the  selling  price is fixed and  determinable;  and (4)  collectibility  is
reasonably  assured.  Determination  of  criteria  (3)  and  (4)  are  based  on
management's  judgments  regarding the fixed nature of the selling prices of the
products  delivered and the  collectibility  of those  amounts.  Provisions  for
discounts and rebates to customers,  estimated returns and allowances, and other
adjustments are provided for in the same period the related sales are recorded.

On December 17, 2003, the SEC staff released Staff Accounting Bulletin (SAB) No.
104,  Revenue  Recognition.  The staff updated and revised the existing  revenue
recognition in Topic 13, Revenue Recognition,  to make its interpretive guidance
consistent with current accounting  guidance,  principally EITF Issue No. 00-21,
"Revenue  Arrangements with Multiple  Deliverables."  Also, SAB 104 incorporates
portions of the Revenue  Recognition in Financial  Statements - Frequently Asked
Questions  and  Answers  document  that the SEC staff  considered  relevant  and
rescinds  the  remainder.   The  company's  revenue  recognition   policies  are
consistent  with  this  guidance;  therefore,  this  guidance  will  not have an
immediate impact on the company's consolidated financial statements.

Cash Equivalents

For the purpose of the  accompanying  financial  statements,  all highly  liquid
investments  with a maturity of three months or less are  considered  to be cash
equivalents.


                                      F-21



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE A - SUMMARY OF ACCOUNTING POLICIES (continued)

Income Taxes

The Company has adopted Financial  Accounting  Standard No. 109 (SFAS 109) which
requires the recognition of deferred tax liabilities and assets for the expected
future tax  consequences  of events  that have been  included  in the  financial
statement or tax returns. Under this method, deferred tax liabilities and assets
are determined  based on the  difference  between  financial  statements and tax
basis of assets and  liabilities  using enacted tax rates in effect for the year
in which the differences are expected to reverse.  Temporary differences between
taxable income reported for financial reporting purposes and income tax purposes
are insignificant.

Property and Equipment

Property and equipment are stated at cost and  depreciated  over their estimated
useful lives of 3 to 5 years using the straight  line method.  At September  30,
2006 property and equipment consist of:



                                                           2006
                                                       ----------
                                                    
              Computer equipment                          $20,065
              Lab equipment                                51,273
              Furniture                                   105,984
                                                         --------
                                                          177,322

              Accumulated Depreciation                   (20,885)
                                                         --------
              Net                                        $156,437


Impairment of Long-Lived Assets

The Company has adopted  Statement of  Financial  Accounting  Standards  No. 144
(SFAS  144).  The  Statement   requires  that  long-lived   assets  and  certain
identifiable intangibles held and used by the Company be reviewed for impairment
whenever events or changes in circumstances indicate that the carrying amount of
an asset may not be recoverable.  Events relating to recoverability  may include
significant  unfavorable changes in business conditions,  recurring losses, or a
forecasted  inability to achieve  break-even  operating results over an extended
period. The Company evaluates the recoverability of long-lived assets based upon
forecasted undercounted cash flows. Should impairment in value be indicated, the
carrying  value of  intangible  assets will be  adjusted,  based on estimates of
future discounted cash flows resulting from the use and ultimate  disposition of
the asset.  SFAS No. 144 also  requires  assets to be disposed of be reported at
the lower of the carrying amount or the fair value less costs to sell.

During the year ended  September 30, 2006, the Company  management  performed an
evaluation  of its  intangible  assets  (intellectual  property) for purposes of
determining the implied fair value of the assets at September 30, 2006. The test
indicated that the recorded  remaining book value of its  intellectual  property
exceeded its fair value,  as determined by discounted  cash flows.  As a result,
upon completion of the  assessment,  management  recorded a non-cash  impairment
charge of  $5,655,011,  net of tax,  or $0.05 per share  during  the year  ended
September  30, 2006 to reduce the carrying  value of the patents to  $2,091,800.
Considerable  management  judgment  is  necessary  to  estimate  the fair value.
Accordingly, actual results could vary significantly from management's estimates
(See Note B).

Comprehensive Income

The  Company  does not have any  items  of  comprehensive  income  in any of the
periods presented.


                                      F-22



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE A - SUMMARY OF ACCOUNTING POLICIES (continued)

Segment Information

         The Company  adopted  Statement of Financial  Accounting  Standards No.
131,  Disclosures about Segments of an Enterprise and Related Information ("SFAS
131"). SFAS establishes  standards for reporting information regarding operating
segments in annual financial  statements and requires  selected  information for
those  segments  to  be  presented  in  interim   financial  reports  issued  to
stockholders.  SFAS 131 also establishes standards for related disclosures about
products and services and geographic areas. Operating segments are identified as
components of an enterprise about which separate discrete financial  information
is available for evaluation by the chief  operating  decision maker, or decision
making  group,  in  making  decisions  how  to  allocate  resources  and  assess
performance.  The information disclosed herein, materially represents all of the
financial information related to the Company's principal operating segment.

Net Loss Per Share

The Company has adopted  Statement  of  Financial  Accounting  Standard No. 128,
"Earnings Per Share,"  specifying the  computation,  presentation and disclosure
requirements  of earnings per share  information.  Basic  earnings per share has
been  calculated  based  upon the  weighted  average  number  of  common  shares
outstanding.  Stock  options and  warrants  have been  excluded as common  stock
equivalents  in  the  diluted   earnings  per  share  because  they  are  either
antidilutive,  or their effect is not material. Fully diluted shares outstanding
were  199,930,486  and  112,230,392  for the years ended  September 30, 2006 and
2005, respectively.

Stock Based Compensation

In December  2002,  the FASB issued SFAS No. 148,  "Accounting  for  Stock-Based
Compensation-Transition and Disclosure-an amendment of SFAS 123." This statement
amends SFAS No.  123,  "Accounting  for  Stock-Based  Compensation,"  to provide
alternative methods of transition for a voluntary change to the fair value based
method of accounting for stock-based employee  compensation.  In addition,  this
statement  amends  the  disclosure  requirements  of  SFAS  No.  123 to  require
prominent  disclosures in both annual and interim financial statements about the
method of accounting for stock-based  3employee  compensation  and the effect of
the method  used on  reported  results.  The  Company  has chosen to continue to
account for stock-based compensation using the intrinsic value method prescribed
in APB  Opinion No. 25 and related  interpretations.  Accordingly,  compensation
expense for stock options is measured as the excess,  if any, of the fair market
value of the Company's stock at the date of the grant over the exercise price of
the related option. The Company has adopted the annual disclosure  provisions of
SFAS No. 148 in its financial  reports for the year ended September 30, 2006 and
for the  subsequent  periods.  The Company  issued  employee  unvested  employee
options as stock-based compensation during the year ended September 30, 2006 and
therefore has no  unrecognized  stock  compensation  related  liabilities  ended
September 30, 2006.  On January 1, 2006,  we adopted the fair value  recognition
provisions  of  Financial  Accounting  Standards  Board  ("FASB")  Statement  of
Financial  Accounting  Standards  ("SFAS") No. 123,  Accounting  for Stock Based
Compensation, to account for compensation costs under our stock option plans. We
previously utilized the intrinsic value method under Accounting Principles Board
Opinion No. 25,  Accounting  for Stock  Issued to Employees  (as amended)  ("APB
25").  Under the intrinsic  value method  prescribed by APB 25, no  compensation
costs were recognized for our employee stock options because the option exercise
price  equaled  the market  price on the date of the grant.  Prior to January 1,
2006 we only  disclosed  the pro forma  effects on net income and  earnings  per
share  as if the fair  value  recognition  provisions  of SFAS  123(R)  had been
utilized.


                                      F-23



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE A - SUMMARY OF ACCOUNTING POLICIES (continued)

In adopting SFAS No. 123(R), we elected to use the modified  prospective  method
to account for the transition  from the intrinsic value method to the fair value
recognition  method.  Under modified  prospective  method,  compensation cost is
recognized  from the adoption date forward for all new stock options granted and
for any outstanding unvested awards as if the fair value method had been applied
to those  awards as of the date of the grant.  In the year ended  September  30,
2006;  the Company  granted  employee  stock  options  vesting  from the date of
service.. The fair value of $153,000 was recorded as a charge to operations.

The following  table shows the effect on net earnings and earnings per share had
compensation  cost been  recognized  based upon the estimated  fair value on the
grant date of stock  options for year ended  September  30, 2005,  in accordance
with  SFAS  123,  as  amended  by  SFAS  No.  148  "Accounting  for  Stock-Based
Compensation - Transition and Disclosure":



                                                                               For the Period
                                                                                September, 16
                                                                                2002 (Date of

                                                               For The Year       Inception
                                                               ended Sept 30       through

                                                                   2005         Sept 30,2005
                                                                (RESTATED)       (RESTATED)
                                            ----------------  ---------------- ----------------
                                                                      
Net loss - as reported                                        $  (67,109,519)  $  (92,334,791)
Add: Total stock based employee
compensation expense as reported under
intrinsic value method ( APB No. 25)                                      -                -

Deduct: Total stock based employee
compensation expense as reported under
fair value method ( APB No. 123)                                  (1,406,350)      (1,406,350)
                                            ----------------  ---------------- ----------------
Net loss - Pro Forma                                          $  (68,515,869)  $  (93,741,141)
                                            ================  ================ ================
Net loss attributable to common
stockholders - Pro Forma                                      $  (68,515,869)  $  (93,741,141)
                                            ================  ================ ================

Basic (and assuming dilution) loss
per share - as reported                                       $        (1.05)
                                            ================  ================ ================
Basic (and assuming dilution) loss
per share - Pro Forma                                         $        (1.08)
                                            ================  ================ ================


Liquidity

As shown in the accompanying  financial  statements,  the Company incurred a net
loss of  $92,334,791  during the period  September  16, 2002 (date of inception)
through  September 30, 2006.  The  Company's  current  liabilities  exceeded its
current assets by $8,382,211 as of September 30, 2006.



                                      F-24



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE A - SUMMARY OF ACCOUNTING POLICIES (continued)

Concentrations of Credit Risk

Financial  instruments and related items, which potentially  subject the Company
to  concentrations  of credit risk,  consist primarily of cash, cash equivalents
and  trade  receivables.   The  Company  places  its  cash  and  temporary  cash
investments with high credit quality  institutions.  At times,  such investments
may be in excess of the FDIC insurance limit. The Company  periodically  reviews
trade  receivables  in  determining  its  allowance for doubtful  accruals.  The
allowance for doubtful accruals at September 30, 2006 was $0.

Research and Development

The Company  accounts for research and development  costs in accordance with the
Financial   Accounting  Standards  Board's  Statement  of  Financial  Accounting
Standards  No. 2 ("SFAS 2"),  "Accounting  for Research and  Development  Costs.
Under SFAS 2, all research and  development  costs must be charged to expense as
incurred.  Accordingly,  internal research and development costs are expensed as
incurred.  Third-party  research and  development  costs are expensed  when  the
contracted  work has been performed or as milestone  results have been achieved.
Company-sponsored  research and  development  costs  related to both present and
future  products  are  expensed in the period  incurred.  The  Company  incurred
research and development  expenses of $153,191,  $638,873 and $1,030,599 for the
years ended  September 30, 2006,  September 30, 2005 and from September 16, 2002
(date of inception) through September 30, 2006, respectively.  On July 12, 2005,
the Company exchanged 36 million shares of stock with a value of $24,120,000 for
intellectual  property acquired from Biowell  Technology,  Inc.(see Note B). The
Company capitalized  $9,430,900 as an intangible asset and expensed  $14,689,100
to acquisition costs in the year ended September 30, 2005.

Advertising

The Company  follows the policy of changing the cost of  advertising to expenses
as accrued.  For the years ended September 30, 2005 and 2005,  advertising costs
were not material to the statement of losses.

Reclassifications

Certain reclassifications have been made in prior year's financial statements to
conform to classifications used in the current year.

Intangible Assets

The Company amortized its intangible assets using the straight-line  method over
their estimated period of benefit. The estimated useful life for patents is five
years while intellectual property uses a seven year useful life. We periodically
evaluate the recoverability of intangible assets and take into account events or
circumstances  that warrant  revised  estimates of useful lives or that indicate
that  impairment   exists.   All  of  our  intangible   assets  are  subject  to
amortization.


                                      F-25



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE A - SUMMARY OF ACCOUNTING POLICIES (continued)

Derivative Financial Instruments

The Company's derivative  financial  instruments consist of embedded derivatives
related to the 10% Secured  Convertible  Promissory  Notes (the "Serial  Notes")
entered into in 2006 (see Note D). These embedded  derivatives  include  certain
conversion  features,  variable  interest  features,  call  options  and default
provisions.   The  accounting  treatment  of  derivative  financial  instruments
requires that the Company recorded the derivatives and related warrants at their
fair  values  as of the  inception  date of the  Note  Agreement  (estimated  at
$2,419,719)  and at fair value as of each  subsequent  balance  sheet  date.  In
addition,  under  the  provisions  of EITF  Issue  No.  00-19,  "Accounting  for
Derivative  Financial  Instruments  Indexed  to, and  Potentially  Settled in, a
Company's  Own  Stock," as a result of entering  into the Notes,  the Company is
required to  classify  all other  non-employee  stock  options  and  warrants as
derivative  liabilities and mark them to market at each reporting date. The fair
value of such options and warrants that were  reclassified  as liabilities  from
additional  paid-in  capital  in the  year  ended  September  30,  2006  totaled
$730,111.  Any change in fair value will be recorded as non-operating,  non-cash
income or expense at each reporting  date. If the fair value of the  derivatives
is higher at the  subsequent  balance  sheet  date,  the  Company  will record a
non-operating, non-cash charge. If the fair value of the derivatives is lower at
the  subsequent  balance  sheet  date,  the Company  will record  non-operating,
non-cash income.  Conversion-related  derivatives were valued using the Binomial
Option  Pricing  Model with the  following  assumptions:  dividend  yield of 0%;
annual  volatility of 111 to 112%;  and risk free interest rate of 4.96 to 5.15%
as well as  probability  analysis  related to trading volume  restrictions.  The
remaining  derivatives  were valued using  discounted cash flows and probability
analysis. The derivatives are classified as long-term liabilities (see Note F).

In June 2005, the Financial  Accounting  Standards  Board  Emerging  Issues Task
Force  issued  EITF  05-04,  "The  Effect of a  Liquidated  Damages  Clause on a
Freestanding  Financial  Instrument Subject to EITF Issue No. 00-19,  Accounting
for Derivative  Financial  Instruments Indexed to, and Potentially Settled in, a
Company's Own Stock".  Under EITF 05-04,  liquidated damages clauses may qualify
as freestanding  financial  instruments for treatment as a derivative liability.
Furthermore,  EITF 05-04 addresses the question of whether a registration rights
agreement should be combined as a unit with the underlying financial instruments
and be evaluated as a single instrument. EITF 05-04 doesn't reach a consensus on
this  question and allows for  treatment  as a combined  unit (Views A and B) as
well as separate  freestanding  financial instruments (View C). On September 15,
2005, the FASB staff postponed further discussion of EITF 05-04. As of September
30, 2006, the FASB has still not rescheduled EITF 05-04 for discussion.

In connection  with the issuance of the convertible  notes and related  warrants
(see Note D), we granted liquidated damages pursuant to a separate  registration
rights agreement.  The Company  adopted View C of EITF 05-04.  Accordingly,  the
liquidated damages pursuant to this registration rights agreement were evaluated
as a stand alone financial instrument. This treatment did not have a significant
different effect than if the Company would have adopted View A or B, because the
warrants were classified as derivative  liabilities.  The Company  believes that
should  the FASB staff  reach a  consensus  on EITF  05-04 and  select  combined
treatment  (View A or B), the  warrants  will have to be evaluated as a combined
unit with the liquidated damages pursuant to the registration  rights agreement,
and accordingly,  be evaluated as derivative  liabilities.  The Company does not
believe that its measurement of the derivative  liabilities under View A or View
B would significantly differ from its measurement of the derivative  liabilities
under View C in these circumstances.


                                      F-26



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE A - SUMMARY OF ACCOUNTING POLICIES (continued)

New Accounting Pronouncements

In February 2006, the FASB issued SFAS No. 155.  "Accounting  for certain Hybrid
Financial  Instruments an amendment of FASB Statements No. 133 and 140," or SFAS
No. 155. SFAS No. 155 permits fair value  remeasurement for any hybrid financial
instrument  that contains an embedded  derivative  that otherwise  would require
bifurcation,  clarifies which interest-only strips and principal-only strips are
not subject to the requirements of Statement No. 133,  establishes a requirement
to evaluate interests in securitized financial assets to identify interests that
are  freestanding  derivatives  or that are hybrid  financial  instruments  that
contain  an  embedded   derivative   requiring   bifurcation,   clarifies   that
concentrations  of credit  risk in the form of  subordination  are not  embedded
derivatives,  and  amends  SFAS  No.  140  to  eliminate  the  prohibition  on a
qualifying special purpose entity from holding a derivative financial instrument
that pertains to a beneficial  interest other than another derivative  financial
instrument.  SFAS 155 is effective  for all  financial  instruments  acquired or
issued after the  beginning  of an entity's  first fiscal year that begins after
September 15, 2006. We do not expect the adoption of SFAS 155 to have a material
impact on our  consolidated  financial  position,  results of operations or cash
flows.

In March 2006, the FASB issued FASB Statement No. 156,  Accounting for Servicing
of Financial  Assets - an amendment to FASB  Statement  No. 140.  Statement  156
requires that an entity recognize a servicing asset or servicing  liability each
time it undertakes an obligation to service a financial asset by entering into a
service  contract  under certain  situations.  The new standard is effective for
fiscal years beginning after September 15, 2006. The adoption of SFAS No.156 did
not have a material  impact on the Company's  financial  position and results of
operations.

In July 2006, the FASB issued  Interpretation  No. 48 (FIN 48).  "Accounting for
uncertainty in Income  Taxes".  FIN 48 clarifies the accounting for Income Taxes
by prescribing the minimum  recognition  threshold a tax position is required to
meet before being  recognized  in the  financial  statements.  It also  provides
guidance on derecognition,  measurement, classification, interest and penalties,
accounting in interim  periods,  disclosure  and  transition  and clearly scopes
income taxes out of SFAS 5, "Accounting for Contingencies".  FIN 48 is effective
for fiscal years  beginning  after  December 15, 2006. We have not yet evaluated
the impact of adopting FIN 48 on our consolidated financial position, results of
operations and cash flows.

In September 2006 the Financial  Account Standards Board (the "FASB") issued its
Statement of Financial Accounting  Standards 157, Fair Value Measurements.  This
Statement  defines fair value,  establishes a framework for measuring fair value
in generally accepted  accounting  principles  (GAAP),  and expands  disclosures
about fair value  measurements.  This Statement  applies under other  accounting
pronouncements that require or permit fair value measurements,  the Board having
previously  concluded in those accounting  pronouncements that fair value is the
relevant measurement attribute. Accordingly, this Statement does not require any
new fair value measurements. However, for some entities, the application of this
Statement  will change  current  practice.  FAS 157 effective date is for fiscal
years beginning after November 15, 2007. The Company does not expect adoption of
this standard will have a material impact on its financial position,  operations
or cash flows.

In  September  2006  the FASB  issued  its  Statement  of  Financial  Accounting
Standards  158  "Employers'  Accounting  for Defined  Benefit  Pension and Other
Postretirement  Plans". This Statement improves financial reporting by requiring
an employer to  recognize  the  overfunded  or  underfunded  status of a defined
benefit  postretirement  plan (other than a  multiemployer  plan) as an asset or
liability in its  statement of  financial  position and to recognize  changes in
that funded status in the year in which the changes occur through  comprehensive
income  of a  business  entity  or  changes  in  unrestricted  net  assets  of a
not-for-profit organization. This Statement also improves financial reporting by
requiring  an employer to measure the funded  status of a plan as of the date of
its year-end  statement  of financial  position,  with limited  exceptions.  The
effective date for an employer with publicly  traded equity  securities is as of
the end of the fiscal year ending after  December 15, 2006. The Company does not
expect  adoption of this standard  will have a material  impact on its financial
position, operations or cash flows


                                      F-27



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE B - ACQUISITION OF INTANGIBLE ASSETS

The Company has adopted  SFAS No. 142,  Goodwill  and Other  Intangible  Assets,
whereby the Company  periodically test its intangible assets for impairment.  On
an annual basis, and when there is reason to suspect that their values have been
diminished or impaired, these assets are tested for impairment,  and write-downs
will be included in results from operations.

Biowell Technology, Inc.

On July 12, 2005, the Company  acquired  certain  intellectual  properties  from
Bowell  Technology,   Inc.  ("Biowell")  through  an  Asset  Purchase  Agreement
("Agreement")  in exchange  for 36 million  shares of the  Company's  restricted
common  stock  having  an  aggregate  fair  value  at the  date of  issuance  of
$24,120,000.   The  intangible   assets  acquired  consist  of  proprietary  DNA
anti-counterfeit  trade secrets  created by Biowell that are intended to protect
intellectual property from counterfeiting,  fraud, piracy, product diversion and
unauthorized intrusion.

The purchase price has been allocated as follows:

Amortizable intangible assets acquired are comprised of:



                                                       
Developed core technologies                               $ 2,260,900
Developed product technologies                              7,170,000
                                                          -----------
Total amortizable intangible assets                       $ 9,430,900
Transaction costs                                          14,869,100
                                                          -----------
Total purchase price                                      $24,120,000
                                                          ===========


In Process Research & Development

The Company  concluded as of the date of  acquisition,  the acquired  intangible
assets,  consisting of developed core and product  technologies had reached full
development  and that it was not the  intention of the  Company's  management to
utilize the assets in specific research and development activities as defined in
SFAS No. 2 Accounting for Research & Development Costs, As a result, the Company
determined there was no in-process  research and development ("IPR& D") projects
in place  related  to the  technology  acquired,  nor any  future  research  and
development  activities planned.  Accordingly,  there is no charge to operations
during  the year  ended  September  30,  2005 for IPR&D in  connection  with the
acquisition of the assets.

Transaction costs

The  amount of the  purchase  price  that  could not be  allocated  to  acquired
identifiable  intangible  assets or IPR & D was  $14,689,100  and was charged to
operations  as a cost of the  transaction  during the year ended  September  30,
2005.


                                      F-28



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE B - ACQUISITION OF INTANGIBLE ASSETS (continued)

The  identifiable  intangible  assets  acquired  and  their  carrying  value  at
September 30, 2006 is:



                                                 
Trade secrets and developed technologies
(Weighted average life of 7 years)
                                                     $ 9,430,900

Patents (Weighted average life of 5 years
                                                          34,257

Total Amortized identifiable intangible

assets-Gross carrying value:                         $ 9,465,157
Less:
Accumulated Amortization                              (1,702,683)
Impairment (See below)                                (5,655,011)
                                                     -----------
Net:                                                 $ 2,107,463
Residual value:                                      $         0


During the year ended  September 30, 2006, the Company  management  performed an
evaluation  of its  intangible  assets  (intellectual  property) for purposes of
determining the implied fair value of the assets at September 30, 2006. The test
indicated that the recorded  remaining book value of its  intellectual  property
exceeded its fair value,  as determined by discounted  cash flows.  As a result,
upon completion of the  assessment,  management  recorded a non-cash  impairment
charge of  $5,655,011,  net of tax,  or $0.05 per share  during  the year  ended
September  30, 2006 to reduce the carrying  value of the patents to  $2,091,800.
Considerable  management  judgment  is  necessary  to  estimate  the fair value.
Accordingly,   actual  results  could  vary   significantly   from  management's
estimates.

Total  amortization  expense  charged to operations for the year ended September
30, 2006 and 2005 were $1,354,101 and $346,825 respectively.

Estimated amortization expense as of September 30, 2006 is as follows:



                                 
         2007                       $    370,643
         2008                            370,643
         2009                            365,753
         2010                            363,792
         2011 and after                  636,632
                                    ------------
         Total                      $  2,107,463
                                    ============


NOTE C - ACCOUNTS PAYABLE AND ACCRUED LIABILITIES

Accounts payable and accrued liabilities at September 30, 2006 are as follows:



                                                               
         Accounts payable                                        $   334,675
         Accrued consulting fees                                      30,000
         Accrued payable taxes                                             -
         Accrued interest payable                                    221,390
         Other accrued expenses                                    4,973,967
                                                                 -----------
             Total                                               $ 5,560,032
                                                                 ===========



                                      F-29



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE D - PRIVATE PLACEMENT OF CONVERTIBLE NOTES

Convertible notes payable as of September 30, 2006 are as follows:



                                                              September 30, 2006
                                                              ------------------
                                                                
   10% Secured Convertible Notes Payable dated March 8, 2006,
   net of unamortized debt discount of $537,010 (see below)         $   962,990

   10% Secured  Convertible  Notes Payable dated May 2, 2006,
   net of unamortized debt discount of $303,958 (see below)             696,042

   10% Secured Convertible Notes Payable dated June 15, 2006,
   net of unamortized debt discount of $847,261 (see below)           2,102,739
   Subtotal                                                           3,761,771

   Less, current                                                    $(3,761,771)
                                                                   ------------
   Convertible notes payable -long-term                                      --
                                                                   ============


   10% Secured Convertible Promissory Notes dated March 8, 2006

On March 8, 2006, in connection with a private placement, the Company issued 10%
Secured  Convertible  Promissory  Notes in the  aggregate  principal  amount  of
$1,500,000 (the "Serial Notes") and warrants to purchase 3,000,000 shares of the
Company's common stock to accredited  investors.  The Serial Notes bear interest
at 10%,  mature on  September  7, 2007 and are  convertible  into the  Company's
common stock,  at the holder's  option,  at fifty cents ($0.50) per share during
the period  from the date of  issuance  (March 8, 2006)  through  March 7, 2007.
Should  the holder of the  Serial  Note  elect not to  convert to the  Company's
common stock on or before March 7, 2007, the outstanding  principal,  along with
accrued and unpaid interest automatically converts to the Company's common stock
at an amount equal to 80% of the average bid price of the Company's common stock
on the Over-The-Counter Bulletin Board for a period equal to ten (10) days prior
to  conversion  on the maturity  date of September 7, 2007.  The full  principal
amount of the  Serial  Notes is due upon a  default  under the terms of the Note
Agreement. In addition, the Company granted the Investors a security interest in
all of its  assets  (see Note B).  The  Company  agreed  to file a  registration
statement  with the SEC to effect the  registration  of the shares of its common
stock  underlying  the  Serial  Notes  and the  warrants  within  30 days of the
effective date of the Company's pending  Registration  Statement (SEC File 333 -
122848) being declared effective.  The Company also agreed to use its reasonable
best efforts to cause the  registration  statement  to be declared  effective no
later than 180 days after its filing. If the Registration Statement is not filed
and declared  effective as described  above, the Company will be required to pay
liquidated damages in the form of cash to the holders of the Serial Notes, in an
amount  equal to 2% of the  unpaid  principal  balance  per  month if the  above
deadlines are not met. In the event of a default on the Serial Notes, the Serial
Notes will bear interest at twelve percent (12%) per annum until paid.

The warrants are exercisable  until five years from March 8, 2006 until March 7,
2011 at a price of $0.50 per  share.  The  Company  has the  right,  but not the
obligation, to call these warrants for $1.25 per share at the earlier of (i) one
year from  issuance or (ii) the date that shares of common stock  issuable  upon
conversion of the Serial Notes and exercise of the warrants are  registered  for
resale and the  Company's  common  stock  trades at or above $1.25 per share for
twenty (20)  consecutive  trading days. The Notes include certain  features that
are considered embedded derivative financial  instruments,  such as a variety of
conversion  options,  a variable interest rate feature,  events of default and a
variable liquidated damages clause.

The  initial  relative  fair value  assigned  to the  embedded  derivatives  was
$346,500.

In conjunction with the Notes, the Company issued warrants to purchase 3,000,000
shares of common stock. The accounting treatment of the derivatives and warrants
requires  that the  Company  record the  warrants at their fair values as of the
inception date of the debt issuance, which totaled $512,100.


                                      F-30



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE D - PRIVATE PLACEMENT OF CONVERTIBLE NOTES (continued)

The Company  recorded the fair value of the derivatives  ($346,500) and warrants
($ 512,100) to debt discount,  aggregating $858,600,  which will be amortized to
interest  expense  over the term of the  Notes.  Amortization  of  $321,590  was
recorded for the year ended September 30, 2006.

The market price of the Company's common stock significantly  impacts the extent
to which the Company may be required or may be  permitted  to convert the Serial
Notes into shares of the Company's  common stock.  The lower the market price of
the Company's common stock at the due date of September 7, 2007, the more shares
the Company will need to issue to convert the  principal  and interest  payments
then due on the Notes.

10% Secured Convertible Promissory Notes dated May 2, 2006

On May 2, 2006, in connection with a private  placement,  the Company issued 10%
Secured  Convertible  Promissory  Notes in the  aggregate  principal  amount  of
$1,000,000 (the "Serial Notes") and warrants to purchase 2,000,000 shares of the
Company's common stock to accredited  investors.  The Serial Notes bear interest
at 10%, mature on August 2, 2007 and are convertible  into the Company's  common
stock, at the holder's option, at fifty cents ($.50) per share during the period
from the date of issuance (May 2, 2006)  through May 2, 2007.  Should the holder
of the Serial  Note elect not to convert  to the  Company's  common  stock on or
before May 2, 2007,  the  outstanding  principal,  along with accrued and unpaid
interest automatically converts to the Company's common stock at an amount equal
to  80%  of  the  average  bid  price  of  the  Company's  common  stock  on the
Over-The-Counter  Bulletin  Board for a period  equal to ten (10) days  prior to
conversion on the maturity date of May 2, 2007. The full principal amount of the
Serial  Notes is due upon a default  under the terms of the Note  Agreement.  In
addition,  the Company  granted the Investors a security  interest in all of its
assets (see Note B). The Company  agreed to file a  registration  statement with
the SEC to effect the  registration of the shares of its common stock underlying
the Serial Notes and the warrants  within 30 days of the  effective  date of the
Company's pending Registration  Statement (SEC File 333 - 122848) being declared
effective.  The Company also agreed to use its reasonable  best efforts to cause
the registration statement to be declared effective no later than 180 days after
its filing. In the event of a default on the Serial Notes, the Serial Notes will
bear interest at twelve percent (12%) per annum until paid.

The warrants are exercisable until four years from May 2, 2007 until May 2, 2011
at a  price  of  $0.50  per  share.  The  Company  has  the  right,  but not the
obligation,  to call these  warrants  for $0.001 per share at the earlier of (i)
one year from  issuance and (ii) the date that shares of common  stock  issuable
upon  conversion of the Serial Notes and exercise of the warrants are registered
for resale and the  Company's  common  stock trades at and above $1.00 per share
for twenty (20)  consecutive  trading days. The Notes include  certain  features
that are considered embedded derivative financial instruments, such as a variety
of conversion options, a variable interest rate feature, events of default and a
variable liquidated damages clause.

The  initial  relative  fair value  assigned  to the  embedded  derivatives  was
$82,358.

In conjunction with the Notes, the Company issued warrants to purchase 2,000,000
shares of common stock. The accounting treatment of the derivatives and warrants
requires  that the  Company  record the  warrants at their fair values as of the
inception date of the debt issuance, which totaled $373,600.

The Company  recorded the fair value of the  derivatives  ($82,358) and warrants
($373,600) to debt discount,  aggregating  $455,958,  which will be amortized to
interest  expense  over the term of the  Notes.  Amortization  of  $152,000  was
recorded for the year ended September 30, 2006.

The market price of the Company's common stock significantly  impacts the extent
to which the Company may be required or may be  permitted  to convert the Serial
Notes into shares of the Company's  common stock.  The lower the market price of
the Company's common stock at the due date of September 7, 2007, the more shares
the Company will need to issue to convert the  principal  and interest  payments
then due on the Notes.


                                      F-31



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE D - PRIVATE PLACEMENT OF CONVERTIBLE NOTES (continued)

10% Secured Convertible Promissory Notes dated June 15, 2006

On June 15, 2006, in connection with a private placement, the Company issued 10%
Secured  Convertible  Promissory  Notes in the  aggregate  principal  amount  of
$2,950,000 (the "Serial Notes") and warrants to purchase 5,900,000 shares of the
Company's common stock to accredited  investors.  The Serial Notes bear interest
at 10%, mature on August 2, 2007 and are convertible  into the Company's  common
stock, at the holder's option, at fifty cents ($.50) per share during the period
from the one years from the date of issuance  (June 15,  2006)  through June 15,
2007. Should the holder of the Serial Note elect not to convert to the Company's
common stock on or before June 15, 2007, the outstanding  principal,  along with
accrued and unpaid interest automatically converts to the Company's common stock
at an amount equal to 80% of the average bid price of the Company's common stock
on the Over-The-Counter Bulletin Board for a period equal to ten (10) days prior
to conversion on the maturity date of June 15, 2007. The full  principal  amount
of the Serial Notes is due upon a default under the terms of the Note Agreement.
In addition, the Company granted the Investors a security interest in all of its
assets (see Note B). The Company  agreed to file a  registration  statement with
the SEC to effect the  registration of the shares of its common stock underlying
the Serial Notes and the warrants  within 30 days of the  effective  date of the
Company's pending Registration  Statement (SEC File 333 - 122848) being declared
effective.  The Company also agreed to use its reasonable  best efforts to cause
the registration statement to be declared effective no later than 180 days after
its filing. In the event of a default on the Serial Notes, the Serial Notes will
bear interest at twelve percent (12%) per annum until paid.

The warrants are exercisable  until four years from June 15, 2007 until June 15,
2011 at a price of $0.50 per  share.  The  Company  has the  right,  but not the
obligation,  to call these  warrants  for $0.001 per share at the earlier of (i)
one year from  issuance and (ii) the date that shares of common  stock  issuable
upon  conversion of the Serial Notes and exercise of the warrants are registered
for resale and the  Company's  common  stock trades at and above $1.00 per share
for twenty (20)  consecutive  trading days. The Notes include  certain  features
that are considered embedded derivative financial instruments, such as a variety
of conversion options, a variable interest rate feature, events of default and a
variable liquidated damages clause.

The  initial  relative  fair value  assigned  to the  embedded  derivatives  was
$175,321.

In conjunction with the Notes, the Company issued warrants to purchase 5,900,000
shares of common stock. The accounting treatment of the derivatives and warrants
requires  that the  Company  record the  warrants at their fair values as of the
inception date of the debt issuance, which totaled $929,840.

The Company  recorded the fair value of the derivatives  ($175,321) and warrants
($929,840) to debt discount,  aggregating $1,105,161, which will be amortized to
interest  expense  over the term of the  Notes.  Amortization  of  $257,900  was
recorded for the year ended September 30, 2006.

The market price of the Company's common stock significantly  impacts the extent
to which the Company may be required or may be  permitted  to convert the Serial
Notes into shares of the Company's  common stock.  The lower the market price of
the Company's common stock at the due date of September 7, 2007, the more shares
the Company will need to issue to convert the  principal  and interest  payments
then due on the Notes.

$ 1,675,000 Convertible Notes

Convertible notes payable ("Bridge Unit Offering") in quarterly  installments of
interest only at 10% per annum,  secured by all assets of the Company and due on
the  earlier  of the 9 month  anniversary  date of the  initial  closing  of the
offering or the  completion of any equity  financing of $3,000,000 or more;  the
Company,  at its sole  discretion  may  prepay  principal  at any  time  without
penalty.  The Bridge Unit Offering Notes unpaid principal along with accrued and
unpaid  interest  were  converted to an  aggregate  of  4,988,051  shares of the
Company's common shares at a price equal to approximately $0.33 per share during
the quarter ended March 31, 2005.


                                      F-32



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE D - PRIVATE PLACEMENT OF CONVERTIBLE NOTES (continued)

$ 1,465,000 Convertible Notes

Beginning in December, 2004, the Company sold a 10% convertible debenture in the
aggregate  amount of $ 1,465,000 in a private  placement and exempt offerings to
sophisticated investors, net of costs and fees.

The  Convertible  Note's terms called for the debt to  automatically  convert at
$0.50  per  share  upon  the  filing  a of a  registration  statement  with  the
Securities and Exchange Commission.

The  Company  filed the  registration  statement  on  February  15, 2005 and the
Convertible  Notes were  converted to an  aggregate  of 2,930,000  shares of the
Company's common stock in February 2005.

As  additional  consideration  for the purchase of the  Convertible  Notes,  the
Company  granted to the holders  warrants  entitling  it to  purchase  2,930,000
common  shares of the  Company's  common  stock at the price of $0.75 per share.
These  warrants  were  issued  in  February,  2005 and lapse if  unexercised  by
February,  2010. A registration  rights  agreement was executed in December 2004
and  consummated in February,  2005 requiring the Company to register the shares
of its common  stock  underlying  the  Convertible  Notes and  warrants so as to
permit the public resale thereof. The registration rights agreement provided for
the payment of  liquidated  damages of 3.5% of the  aggregate  Convertible  Note
financing per month if the stipulated  registration  deadlines were not met. The
liquidated  damages,  which  approximate $ 51,275 per month, may be paid, at the
Company's option, in cash or unregistered shares of the Company's common stock.

In  accordance  with  Emerging  Issues  Task Force Issue  98-5,  Accounting  for
Convertible  Securities  with a Beneficial  Conversion  Features or Contingently
Adjustable  Conversion Ratios ("EITF 98-5"),  the Company recognized an embedded
beneficial  conversion  feature  present in the Convertible  Notes.  The Company
allocated a portion of the proceeds equal to the intrinsic value of that feature
to additional paid-in capital.  The Company recognized and measured an aggregate
of  $1,465,000 of the  proceeds,  which is equal to the  intrinsic  value of the
embedded  beneficial  conversion  feature,  to additional  paid-in capital and a
discount  against  the  Convertible  Notes.  Since the  Convertible  Notes  were
converted to the  Company's  common stock in February  2005,  the debt  discount
attributed to the  beneficial  conversion  feature of $ 1,465,000 was charged to
interest expense in its entirety during the year ended September 30, 2005.

In conjunction  with raising capital through the issuance of Convertible  Notes,
the Company has issued a warrant in February,  2005 that has registration rights
for the  underlying  shares.  As the contract must be settled by the delivery of
registered shares and the delivery of the registered shares is not controlled by
the  Company,  pursuant  to EITF 00-19,  "Accounting  for  Derivative  Financial
Instruments  Indexed to, and Potentially Settled in, a Company's Own Stock", the
net value of the  warrants  at the date of  issuance  was  recorded as a warrant
liability on the balance sheet  $3,845,039 and charged to operations as interest
expense.  Upon the  registration  statement being declared  effective,  the fair
value of the warrant on that date will be  reclassified  to equity.  The Company
initially  valued the warrants  using the  Black-Scholes  pricing model with the
following  assumptions:  (1) dividend  yield of 0%; (2) expected  volatility  of
148.66%, (3) risk-free interest rate of 3.21%, and (4) expected life of 3 years.

In connection  with the  placement of the  $1,465,000  of  convertible  notes as
described above, the Company agreed to registered shares of the Company's common
stock underlying  certain  previously issued and outstanding  warrants that were
not subject to a  registration  rights  agreement at the time the warrants  were
issued. These warrants consist of following:

105,464  warrants  entitling  the  holder  to  purchase  105,464  shares  of the
Company's  common  stock at the price of $0.10 per share.  These  warrants  were
issued in July, 2004 and lapse if unexercised by July, 2009.


                                      F-33



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE D - PRIVATE PLACEMENT OF CONVERTIBLE NOTES (continued)

1,602,500  warrants  entitling  the holder to purchase  1,602,500  shares of the
Company's  common  stock at the price of $0.60 per share.  These  warrants  were
issued in October, 2003 and lapse if unexercised by October, 2008.

As a result,  the Company is required to  classify  the  warrants as  derivative
liabilities  and mark then to market at each  reporting  date. The fair value of
the warrants that were subject to registration  reclassified as liabilities from
additional  paid in  capital  at  February  2005  totaled  $3,108,851.  Upon the
registration statement being declared effective,  the fair value of the warrants
on that date will be reclassified to equity.  The Company  initially  valued the
warrants using the Black-Scholes  pricing model with the following  assumptions:
(1) dividend  yield of 0%; (2) expected  volatility  of 148.66%,  (3)  risk-free
interest rate of 3.21%, and (4) expected life of 3 years.

$ 7,371,000 Convertible Notes

In January and February,  2005, the Company sold a 10% convertible  debenture in
the aggregate  amount of $7,371,000 in a private  placement and exempt offerings
to sophisticated investors, net of costs and fees.

The  Convertible  Note's terms called for the debt to  automatically  convert at
$0.50 per share upon the filing of a registration  statement with the Securities
and Exchange Commission.

The  Company  filed the  registration  statement  on  February  15, 2005 and the
Convertible  Notes were  converted to an aggregate of  14,742,000  shares of the
Company's common stock.

As  additional  consideration  for the purchase of the  Convertible  Notes,  the
Company  granted to the holders  warrants  entitling  it to purchase  14,742,000
common  shares of the  Company's  common  stock at the price of $0.75 per share.
These warrants lapse if  unexercised  by February,  2010. A registration  rights
agreement was executed and consummated in January, 2005 requiring the Company to
register the shares of its common stock  underlying  the  Convertible  Notes and
warrants so as to permit the public  resale  thereof.  The  registration  rights
agreement  provided  for  the  payment  of  liquidated  damages  of  3.5% of the
aggregate  Convertible  Note financing per month if the stipulated  registration
deadlines were not met. The liquidated damages,  which approximate $ 257,985 per
month, may be paid, at the Company's option,  in cash or unregistered  shares of
the Company's common stock.

In  accordance  with  Emerging  Issues  Task Force Issue  98-5,  Accounting  for
Convertible  Securities  with a Beneficial  Conversion  Features or Contingently
Adjustable  Conversion Ratios ("EITF 98-5"),  the Company recognized an embedded
beneficial  conversion  feature  present in the Convertible  Notes.  The Company
allocated a portion of the proceeds equal to the intrinsic value of that feature
to additional paid-in capital.  The Company recognized and measured an aggregate
of $ 7,731,000 of the  proceeds,  which is equal to the  intrinsic  value of the
embedded  beneficial  conversion  feature,  to additional  paid-in capital and a
discount  against  the  Convertible  Notes.  Since the  Convertible  Notes  were
converted to the  Company's  common stock in February  2005,  the debt  discount
attributed to the  beneficial  conversion  feature of $ 7,371,000 was charged to
interest expense in its entirety during the year ended September 30, 2005.

In conjunction  with raising capital through the issuance of Convertible  Notes,
the Company has issued warrants that have registration rights for the underlying
shares. As the contract must be settled by the delivery of registered shares and
the delivery of the registered shares is not controlled by the Company, pursuant
to EITF 00-19,  "Accounting for Derivative Financial Instruments Indexed to, and
Potentially Settled in, a Company's Own Stock", the net value of the warrants at
the date of issuance  was recorded as a warrant  liability on the balance  sheet
$19,303,175 and charged to operations as interest expense. Upon the registration
statement being declared  effective,  the fair value of the warrant on that date
will be reclassified to equity.  The Company initially valued the warrants using
the  Black-Scholes  pricing model with the following  assumptions:  (1) dividend
yield of 0%; (2) expected volatility of 152.59%,  (3) risk-free interest rate of
3.67%, and (4) expected life of 5 years.


                                      F-34



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE D - PRIVATE PLACEMENT OF CONVERTIBLE NOTES (continued)

Revaluation of Warrant Liability

In accordance with SFAS 133  "Accounting for Derivative  Instruments and Hedging
Activities",  the Company  revalued the warrants  issued subject to registration
rights as of September  30, 2006 using the  Black-Scholes  option  pricing model
(see Note G).  Assumptions  were as  follows:  risk free rate- 4.57 to 4.90%,  a
volatility  of 127.02% and a deemed fair value of common  stock of $0.10,  which
was the closing price of the Company's  common stock on September 30, 2006.  The
difference of $16,844,837 between the fair value of the warrants as of September
30, 2006 and the previous  valuation as of September 2005 has been recorded as a
gain on  revaluation  of warrant  liability,  and  included in the  accompanying
consolidated financial statements.

NOTE E - RELATED PARTY TRANSACTIONS

At September 30, 2006, notes payable are as follows:



                                                                                    
Note payable, unsecured, related party, payable from August 1, 2005,                    $     410,429
right to convert to restricted stock in lieu of cash, rate of interest
2%, 160,000 shares prior to October 31, 2005 or 180,000 shares after
that date.  Since September 2005, the Company has made no payments and                 --------------
is now in default. (See Note N)

Less: current portion                                                                        (410,429)
                                                                                      ---------------

Note payable - long-term                                                                $          -


In February,  2005 the Company issued 1,500,000 shares of its restricted  common
stock to a Company  officer and Director in exchange for $600,000 of  previously
incurred debt. The debt was in the form of a promissory note.

The  Company  valued  the  shares at $1.31 per share for a total of  $1,965,000,
which represents the fair value of the common stock on the date of the exchange.
The difference  between the fair value of the common stock of $1,965,000 and the
face value of the debt of $600,000  or  $1,365,000  has been  charged to current
period interest expense.

On July 15, 2005,  the Company  entered into a consulting  agreement with Timpix
International  Limited  ("Timpix") for the  consulting  services of three former
Biowell employees, Drs. Jun-Jei Sheu, Ben Liang and Johnson Chen. The consulting
agreement is for the shorter of two years, or until all of the consultants  have
obtained a visa to work in the United States and execute  employment  agreements
with the Company.  The consulting  agreement shall  automatically  renew for one
year periods until terminated. Pursuant to the consulting agreement, the Company
is obligated to pay $47,000 per month, which is apportioned at $20,000 per month
for Mr.  Sheu,  $15,000  per month for Mr.  Liang and  $12,000 per month for Mr.
Chen. In the event that either of Messrs.  Sheu,  Liang or Chen becomes employed
by us, the monthly consulting fee shall be reduced accordingly.  The Company has
negotiated an agreement to restructure the Consulting  Agreement,  whereby, fees
owed to Timpix from July 2005 through  September 2006 will be waived.  (See Note
N)


                                      F-35



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE E - RELATED PARTY TRANSACTIONS (continued)

In July 2005, the Company entered into a license agreement with Biowell, whereby
the  Company  granted  Biowell  an  exclusive  license  to  sell,   market,  and
sub-license the Company's  products in selected Asian  countries.  The exclusive
license for such selected territories is for an initial period of until December
31, 2010, and if Biowell meets its performance goals, the license agreement will
extend for an additional five year term. The license agreement gives Biowell the
initial rights to future anti-fraud biotechnologies developed by the Company and
also new applications for the existing  technology that may be developed for the
marketplace  as long as the license  agreement  remains in effect.  In the event
that Biowell shall  sub-license  the products  within its  territories,  Biowell
shall pay the Company 50% of all fees,  payments  or  consideration  or any kind
received in connection with the grant of the sublicense.  Biowell is required to
pay a  royalty  of 10% on all net sales  made and is  required  to meet  certain
minimum annual net sales in its various territories. Cumulative royalties earned
from the period July 2005  through  September  30, 2006  totaled  $36,851 and is
included  in other  income.  Net  amounts  owed to the  Company  by  Biowell  in
connection with the royalty agreement as of September 30, 2006 are $ 8,419.

On March 29, 2006,  and April 13,  2006,  the Company  borrowed  $200,000 in the
aggregate, at a rate of 7.5% per annum, from BioCogent, Ltd., ("BioCogent"),  an
entity controlled by the Company's President and Chief Executive Officer.  These
loans  were due and  payable  upon  the  earlier  to  occur of (1) the  close of
business on June 30,  2006,  or (2) the closing of the  issuance and sale by the
Company of its securities for gross proceeds of at least  $250,000.  These loans
were paid in full as of September 30, 2006.

The Company's  current and former officers and shareholders  have advanced funds
to the  Company  for travel  related and  working  capital  purposes.  No formal
repayment terms or arrangements  exist.  There were no advances due at September
30, 2006. $-0-.

During the year ended  September  30, 2006,  $18,900 of the  Company's  sales of
products , or 100% of total sales,  were made to Dr. Suwelack Skin & Health Care
AG ("Dr.  Suwelack"),  a German  corporation.  James A. Hayward,  a director and
Chief Executive Officer of the Company,  is Dr. Suwelack's  President and serves
on its board of directors. As of September 30, 2006, amounts owed to the Company
by Dr. Suwelack are $9,630, which amount is included in accounts receivable.


NOTE F - CAPITAL STOCK

The Company is authorized to issue  10,000,000  shares of preferred stock with a
$0.001  par value per share.  The  Company is  authorized  to issue  250,000,000
shares of common  stock,  with a $0.001  par value per share as the  result of a
shareholder  meeting  conducted on February 14, 2005.  Prior to the February 14,
2005 share increase and par value change, the Company had 100,000,000 authorized
shares  with a par  value of $0.50.  In  February  2005,  the  Company  passed a
resolution  authorizing change in the par value per common shares from $0.50 per
share to $0.001 per share.

The preferred stock is convertible at the option of the holder into common stock
at the rate of  twenty-five  (25)  shares  of  common  for  every  one  share of
preferred at the option of the holder.

Preferred and Common Stock Transactions During the Year Ended September 30, 2003

During the period  September 16, 2002 through  September  30, 2003,  the Company
issued 100,000 shares of common stock in exchange for  reimbursement of services
provided by the founders of the Company. The Company valued the shares issued at
approximately  $1,000,  which represents the fair value of the services received
which did not differ materially from the value of the stock issued.

In  October,  2002,  the Company  issued  10,178,352  shares of common  stock in
exchange for the previously  issued 100,000 shares to the Company's  founders in
connection with the merger with Prohealth Medical Technologies, Inc.

In October,  2002 the Company  canceled 100,000 shares of common stock issued to
the Company's founders.


                                      F-36



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE F - CAPITAL STOCK (continued)

During the fiscal year ended  September 30, 2003, the Company  issued  2,369,130
shares of common stock,  net of  cancellation  of 860,000 shares in exchange for
consulting services. The Company valued the shares issued at $2,191,227,  net of
cancellation  of  $60,008,  which  represents  the fair  value  of the  services
received which did not differ materially from the value of the stock issued.

In November  2003, the Company issued 876,000 shares of common stock in exchange
for subscription at approximately $ 0.065 per share.

In January 2003, the Company issued 1,500,000 shares of common stock in exchange
for a licensing  agreement (see Note I). The Company valued the shares issued at
approximately $0.065 per share,  which  represents the fair value of the license
received which did not differ materially from the value of the stock issued. The
Company charged the cost of the license to operations.

In March 2003, the Company issued 10,140,000 shares of common stock to Company's
founders in exchange for services. In accordance with EITF 96-18 the measurement
date to determine fair value was in September 2002. This was the date at which a
commitment for  performance  by the counter party to earn the equity  instrument
was reached.  The Company valued the shares issued at approximately  $0.0001 per
share,  which  presents  the fair value of the services  received  which did not
differ materially from the value of the stock issued.

In connection with the Company's acquisition of ProHealth, the controlling owner
of ProHealth  granted the Company an option to acquire up to 8,500,000 shares of
the  Company's  common stock in exchange  for $100,000  (see Note C). The option
expires on December 10, 2004. On June 30, 2003, the Company exercised its option
and acquired  7,500,000  common  shares under this  agreement in exchange for an
$88,500 convertible promissory note payable to the former controlling owner. The
Company  has an option  through  December  10,  2004 to  acquire  the  remaining
1,000,000 shares from the former  controlling owner in exchange for $11,500.  On
June 30, 2003, the Company retired the 7,500,000 shares common acquired pursuant
to the option agreement.

In September  2003,  the Company  issued  19,200 shares of common stock for cash
previously subscribed at $2.50 per share.

During the fiscal year ended  September  30, 2003,  the Company  issued  154,000
shares of common stock in exchange for previously issued options to purchase the
Company's common stock at $1.00 per share.

During the fiscal year ended  September  30,  2003,  the Company  issued  74,400
shares of common stock in exchange for cash at approximately $0.89 per share.

Preferred and Common Stock Transactions During the Year Ended September 30, 2004

In October 2003, the Company issued 15,000 shares of convertible preferred stock
in exchange for  services.  The Company  valued the shares issued at the $15 par
value and recorded the value for services  when the shares were  converted  into
common shares as identified below.

During the fiscal year ended  September 30, 2004, the Company  issued  5,149,472
shares of common stock,  net of cancellation of 155,000 shares,  in exchange for
consulting services. The Company valued the shares issued at $8,787,315,  net of
cancellation  of  $408,575,  which  represents  the fair  value of the  services
received which did not differ materially from the value of the stock issued

During the fiscal year ended  September  30, 2004,  the Company  issued  340,500
shares of common stock for shares previously  subscribed at approximately  $2.04
per share.

In March 2004, the Company  issued 55,000 of common stock for options  exercised
at $1.00 per share.


                                      F-37



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE F - CAPITAL STOCK (continued)

During the fiscal year ended  September 30 2004,  the Company  converted  15,000
preferred  shares  into  375,000  shares of  common  stock at $1.47 per share in
exchange for employee services valued at $549,750.

In June 2004, the Company sold 250,000 shares of common stock at $1.00 per share
for total proceeds of $250,000 pursuant to private placement.

In September  2004, the Company issued 60,000  convertible  preferred  shares at
$25.00, in exchange for consulting services valued at $1,500,000.

Preferred and Common Stock Transactions During the Year Ended September 30, 2005

During the fiscal year ended  September 30, 2005, the Company issued  11,040,647
shares of common stock, net of cancellation of 2,329,600 shares, in exchange for
consulting  and  employee  services.  The  Company  valued the shares  issued at
$13,008,371,  net of cancellation of $1,328,269, which represents the fair value
of the services  received which did not differ  materially from the value of the
stock issued

During the fiscal year ended  September 30, 2005, the Company  issued  1,500,000
shares of common stock for shares previously  subscribed at approximately  $0.54
per share.

During the fiscal year ended  September  30, 2005,  the Company  issued  267,500
shares of common stock for warrants and options exercised at approximately $0.39
per share

During the fiscal year ended September 30, 2005, the Company retired  $1,796,057
of convertible notes payable for 5,363,809 shares of common stock. The Notes are
convertible into shares of common stock at a price of $0.34 per share.

During the fiscal year ended  September 30, 2005, the Company issued  14,442,000
shares of common  stock at $0.50 per share  pursuant  to the  exercise  terms of
notes  payable.  This  issuance is considered  exempt under  Regulation D of the
Securities Act of 1933 and Rule 506 promulgated thereunder.

In October 2004,  the Company  issued 500,000 shares of common stock in exchange
for debt at $0.50 per share.

In December 2004,  the Company  issued net 5,500,000  shares of common stock for
default  as per terms of notes  payable  for  $88,500.  Out of total,  3,500,000
shares were  retained in escrow on behalf of another  party for future  deferred
compensation.

In  February  2005,  the  Company in  exchange  for a related  party note in the
outstanding  principal  amount of $600,000 and as settlement  for certain claims
related thereto issued  1,500,000  shares of common stock using a price of $1.31
per share. (See note E)

In July 2005, the Company issued 36 million shares in exchange for  intellectual
property at approximately $0.67 per share for a total of $24,120,000.  The value
of the  acquired  intangible  assets was  established  at  $9,430,900,  with the
balance of the purchase price,  or $14,689,100,  charged to operations as a cost
of the transaction. (See Note B)


                                      F-38



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE F - CAPITAL STOCK (continued)

In July 2005,  the Company issued  8,550,000  shares of its common stock without
restriction to employees in exchange for services  rendered.  The Company valued
the shares issued at  approximately  $0.48 per share for a total of  $3,840,000,
which  represents  the fair value of the services  received which did not differ
materially from the value of the stock issued.  The Company is investigating the
circumstances surrounding the issuance of the shares and the possible subsequent
resale of  certain  of the  shares on the open  market  and the  possibility  of
violations of securities laws (see Note H).

In September  2005, the Company issued  814,158  penalty shares  pursuant to the
pending SB-2  registration  terms.  In  connection  with the  7,371,000  million
convertible  debt financing in the quarter ended March 30, 2005, the Company was
obligated to complete a stock  registration by July 2005. Since the registration
was not  effective  by July 2005,  the  Company  paid the  required  $257,985 of
liquidated  damages in shares of Company stock  accruing at the rate of 3.5% per
month on the face value of the Notes for the month of July and August 2005.  The
Company valued the shares issued at approximately $0.62 per share for a total of
$502,672.

In September  2005, the Company issued  391,224  penalty shares  pursuant to the
pending SB-2  registration  terms.  In  connection  with the  7,371,000  million
convertible  debt financing in the quarter ended March 30, 2005, the Company was
obligated to complete a stock  registration by July 2005. Since the registration
was not  effective  by July 2005,  the  Company  paid the  required  $257,985 of
liquidated  damages in shares of Company stock  accruing at the rate of 3.5% per
month on the face  value of the  Notes  for the  month of  September  2005.  The
Company valued the shares issued at approximately $0.70 per share for a total of
$273,857.

Preferred and Common Stock Transactions During the Year Ended September 30, 2006

In October 2005,  the Company  issued 100,000 shares of common stock in exchange
for consulting  services.  The Company valued the shares issued at approximately
$0.75 per share for a total of $75,000,  which  represents the fair value of the
services  received which did not differ  materially  from the value of the stock
issued.

In October 2005,  the Company  cancelled  350,000 shares  previously  issued for
services valued at $210,000.

In October 2005,  the Company issued 400,000 shares of common stock for services
rendered at $0.50 per share for a total of $200,000  which  represents  the fair
value of the services received which did not differ materially from value of the
stock issued.

In December,  2005, the Company issued 40,000 shares of common stock  subscribed
for cash at $0.50 per share for a total of  $20,000  pursuant  to the terms of a
subscription  payable.  This issuance is considered exempt under Regulation D of
the Securities Act of 1933 and Rule 506 promulgated thereunder.

In  December  2005,  in  connection  with debt  financing,  the  Company  issued
5,500,000  warrants to purchase the Company's  common stock at an exercise price
of $0.50 for five years. The fair value attributable to the warrants of $563,750
was recorded as to current period  operations  with an offsetting  adjustment to
additional paid in capital.

In January,  2006, the Company  cancelled  250,000 shares  previously issued for
services valued at $150,000.

In January 2006,  the Company  issued  2,096,139  penalty  shares  pursuant to a
registration  rights  agreement.   In  connection  with  the  7,371,000  million
convertible  debt financing in the quarter ended March 31, 2005, the Company was
obligated to complete a stock  registration by July 2005. Since the registration
statement was not effective by July 2005, the Company paid the required $257,985
of liquidated  damages in shares of Company  stock  accruing at the rate of 3.5%
per month on the face value of the Notes for the month of November  and December
2005. The Company valued the shares issued at approximately  $0.25 per share for
a total of $515,973.  The Company continues to accrue the penalties  relating to
the pending registration statement.


                                      F-39



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE F - CAPITAL STOCK (continued)

In February  2006, the Company issued 160,000 shares of common stock in exchange
for consulting  services.  The Company valued the shares issued at approximately
$0.17 per share for a total of $27,200,  which  represents the fair value of the
services  received which did not differ  materially  from the value of the stock
issued

In  February  2006,  the  Company  issued  3,800,000  shares of common  stock in
exchange  for  consulting  services.  The  Company  valued the shares  issued at
approximately $0.16 per share for a total of $608,000, which represents the fair
value of the services received which did not differ materially from the value of
the stock issued

In March 2006,  the  Company  cancelled  150,000  shares  previously  issued for
services valued at $120,000.

In July 2006,  the Company issued  2,400,000  shares of common stock in exchange
for consulting services.  The Company valued the shares at $0.20 per share for a
total of $480,000,  which  represents  the fair value of the  services  received
which did not differ materially from the value of the stock issued.

NOTE G - STOCK OPTIONS AND WARRANTS

Warrants

The Company  issued  options and warrants  during the years ended  September 30,
2006 and 2005 for  consulting  and employee  services,  fees in connection  with
obtaining  financing and various other services.  The following table summarizes
the changes in options and warrants  outstanding  and the related prices for the
shares of the  Company's  common  stock issued to  shareholders  of the Company.
These warrants were granted in lieu of cash compensation for services  performed
or financing expenses in connection with the sale of the Company's common stock.



                                                                                                    Warrants
                                      Warrants Outstanding                                         Exercisable
                                        Weighted Average          Weighed                           Weighted
                     Number          Remaining Contractual        Average       Number               Average
Exercise                                                         Exercise                           Exercise
Prices            Outstanding             Life (Years)             Price        Exercisable           Price
-------------    ---------------    -------------------------    -----------    --------------    --------------
                                                                                 
    0.09             18,900,000               4.92               $     0.09        18,900,000     $        0.09
   $0.10                105,464               2.76               $     0.10           105,464     $        0.10
   $0.20                  5,000               2.88               $     0.20             5,000     $        0.20
   $0.50             16,450,000               3.77               $     0.50         8,550,000     $        0.50
   $0.55              9,000,000               2.47               $     0.55         9,000,000     $        0.55
   $0.60              9,132,000               3.38               $     0.60         9,132,000     $        0.60
   $0.70                950,000               1.59               $     0.70           950,000     $        0.70
   $0.75             17,727,000               3.75               $     0.75        17,727,000     $        0.75
   $1.00                100,000               0.79               $     1.00           100,000     $        1.00
                     ----------                                                    ----------
                     72,369,464                                                    64,469,464




                                      F-40



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE G - STOCK OPTIONS AND WARRANTS (continued)

Transactions involving warrants are summarized as follows:



                                                         Weighted Average Price
                                  Number of Shares             Per Share

                                                      
Balance, September 30, 2004               4,870,253         $       0.63
                                  ------------------      ---------------
Granted                                  32,873,000                 0.71
Exercised                                  (142,500)                0.34
Canceled or expired                        (731,289)                0.65
                                  ------------------      ---------------
Balance,  September 30, 2005             36,869,464         $       0.67
                                  ------------------      ---------------
Granted                                  35,250,000                 0.29
Exercised                                         -                    -
Canceled or expired                               -                    -
                                  ------------------      ---------------
Balance, September 30, 2006              72,119,464         $       0.48
                                  ------------------      ---------------


In July  2005,  the  Company  consummated  an  agreement  with  Trilogy  Capital
Partners,  Inc. and Joff Pollon  ("Trilogy"  and "Pollon") to provide  marketing
services to the Company for a term of one year,  and  terminable  thereafter  by
either  party  upon 30  days  prior  written  notice.  In  connection  with  the
agreement,  the Company  agreed to pay  Trilogy a monthly  fee of  $12,500.  The
Company  also issued to Trilogy and Pollon  warrants to purchase an aggregate of
9,000,000  shares of common stock at $0.55 per share,  exercisable  for a period
of three years from issuance. As the contract must be settled by the delivery of
registered shares and the delivery of the registered shares is not controlled by
the  Company,  pursuant  to EITF 00-19,  "Accounting  for  Derivative  Financial
Instruments  Indexed to, and Potentially Settled in, a Company's Own Stock", the
net value of the  warrants  at the date of  issuance  was  recorded as a warrant
liability of $4,117,500 and charged to operations as consulting  fees.  Upon the
registration statement being declared effective,  the fair value of the warrants
on that date will be reclassified to equity.  The Company  initially  valued the
warrants using the Black-Scholes  pricing model with the following  assumptions:
(1) dividend  yield of 0%; (2) expected  volatility  of 155.03%,  (3)  risk-free
interest rate of 3.82%, and (4) expected life of 3 years.

In accordance with SFAS 133  "Accounting for Derivative  Instruments and Hedging
Activities",  the Company  revalued the warrants as of September  30, 2006 using
the Black-Scholes option pricing model. The difference between the fair value of
the  warrants as of September  30, 2006 and the  previous  valuation as of July,
2005 has been  recorded  as a gain on  revaluation  of  warrant  liability,  and
included in the accompanying consolidated financial statements (see Note H)

In the year ended September 30, 2006, the Company granted 5,500,000  warrants to
holders of the Company's  $550,000 notes payable with a $0.50 exercise price and
a five year life. For the first 36 months,  the warrants  include  anti-dilution
protection  assuming no  adjustment  in the  exercise  price per share of common
stock upon any reverse split of the Company's common stock.

In the year ended September 30, 2006, the Company  granted  200,000  warrants as
settlement  to bridge  financing  with a $0.70  exercise  price and a three year
life.

In the year ended September 30, 2006, the Company granted 10,900,000 warrants to
holders of the  Company's  convertible  notes (See Note D). The warrants have an
exercise price of $0.50 per with a five year life. Under certain conditions,  as
described in Note D, the Company as the option to redeem these warrants.


                                      F-41



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE G - STOCK OPTIONS AND WARRANTS (continued)

During the year  ended  September  30,  2006,  the  Company  granted  18,900,000
warrants to directors and advisors in exchange for services.. The estimated fair
value of the compensatory  warrants granted to the non-employees in exchange for
services was determined using the Black-Scholes  pricing model and the following
assumptions:  contractual term of 5 years, a risk free interest rate of 4.68%, a
dividend yield of 0% and  volatility of 123%. The amount of the expense  charged
to operations  for  compensatory  warrants  granted in exchange for services was
$1,426,725 for the year ended September 30, 2006.

The  aggregate  amounts of the expense  charged to operations  for  compensatory
warrants granted in exchange for services and financing  expenses was $1,426,725
and $7,358,569, respectively, for the years ended September 30, 2006 and 2005.

Employee Stock Options

The  following  table  summarizes  the  changes in options  outstanding  and the
related prices for the shares of the Company's  common stock issued to employees
of the Company under a non-qualified employee stock option plan.



             Options Outstanding                             Options Exercisable
                                    Weighted
                                    Average          Weighted                      Weighted
                                   Remaining          Average                       Average
       Exercise       Number      Contractual        Exercise       Number         Exercise
        Prices      Outstanding   Life (Years)         Price     Exercisable         Price
                                                                    
       $   0.68      3,660,000          4.75         $   0.68     2,745,000        $   0.68
           0.09      2,000,000          4.91             0.09             -            0.09
                     ---------                                  ------------
                     5,660,000                                    2,745,000            0.47


Transactions  involving  stock  options  issued to employees  are  summarized as
follows:



                                       Number of       Weighted Average Exercise
                                        Shares                 Price Per Share

                                                    
Outstanding at October 1, 2004                  -            $           -
      Granted                           3,660,000                     0.68
      Exercised                                 -                        -
      Cancelled or expired                      -                        -
                                       -----------           --------------
Outstanding at September 30, 2005       3,660,000            $        0.68
      Granted                           2,000,000                     0.09
      Exercised                                 -                        -
      Canceled or expired                       -                        -
                                      ------------           --------------
Outstanding at September 30, 2006       5,660,000            $        0.47


Effective   January,   2006,  the  Company  adopted  SFAS  123R  and  recognized
compensation  expense in its financial  statements in fiscal 2006.  Prior to the
adoption  of SFAS  123R,  the  Company  accounted  for its  stock  option  plans
according to Accounting  Principles Board Opinion No. 25,  "Accounting for Stock
Issued to Employees."  Accordingly,  no compensation  costs were recognized upon
issuance or exercise of stock options for fiscal 2005.

SFAS No. 123, "Accounting for Stock-Based Compensation," required the disclosure
of the  estimated  fair value of employee  option grants and their impact on net
income  using option  pricing  models that are designed to estimate the value of
options that,  unlike employee stock options,  can be traded at any time and are
transferable. In addition to restrictions on trading, employee stock options


                                      F-42



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE G - STOCK OPTIONS AND WARRANTS (continued)

may include other  restrictions  such as  vesting periods. Further, such  models
require the input  of  highly  subjective  assumptions, including  the  expected
volatility of the stock price.

The weighted-average fair value of stock options granted to employees during the
year ended September 30, 2006 and the weighted-average  significant  assumptions
used to determine those fair values,  using a Black-Scholes option pricing model
are as follows:


                                      F-43



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE G - STOCK OPTIONS AND WARRANTS (continued)



                                                                       2006
                                                                    
       Significant assumptions (weighted-average):
           Risk-free interest rate at  grant date                          4.68%
           Expected stock price volatility                                  123%
           Expected dividend payout                                           -
           Expected option life (in years)                                    5


If the Company recognized compensation cost for the non-qualified employee stock
option plan in  accordance  with SFAS No. 123, the  Company's pro forma net loss
and net loss per share would have been $ 68,515,869 and $1.08, respectively, for
the year ended September 30, 2005.

During the quarter  ended March 31,  2005,  the Company  granted an aggregate of
300,000 stock options to directors that vested immediately.  The exercise prices
of the stock options  granted were below the fair value of the Company's  common
stock at the grant  date.  Compensation  expense  of  $180,000  was  charged  to
operations during the period ended March 30, 2005. In the quarter ended June 30,
2005, the Company  canceled the  unexercised  300,000 stock options and credited
expense for the previously recorded $180,000 in compensation.

In September  2006, the Company  granted an aggregate of 2,000,000 stock options
to employees  vesting based on future  service.  The exercise price of the stock
options granted was at the fair value of the Company's common stock at the grant
date and expires five years from date of issuance.

At September 30, 2006,  the exercise  price of the 5,660,000  options was higher
than  the  closing  price of the  Company's  common  stock on the NASD  Over the
Counter Bulletin Board (the "OTC BB") on September 30, 2006.

The intrinsic  value of options  outstanding  and  exercisable is the difference
between the fair market value of the  Company's  common stock on the  applicable
date  ("Measurement  Value") and the exercise price of those options that had an
exercise price that was less than the Measurement  Value. The intrinsic value of
options  exercised  is the  difference  between  the  fair  market  value of the
Company's common stock on the date of exercise and the exercise price.

Information  pertaining  to the  intrinsic  value  of  options  outstanding  and
exercisable at September 30, 2006 and 2005 is provided below:



                                   2006           2005

                               ------------   ------------
                                        
  Intrinsic value of options
  Outstanding                  $          -   $          -
  Exercisable                  $          -   $          -


Information  pertaining to the intrinsic value of options exercised and the fair
value of options  which became  vested in each of the years ended  September 30,
2006 and 2005 is provided below:



                                               2006           2005

                                           ------------   ------------
                                                    
  Intrinsic value of options exercised     $          -   $          -
  Fair value of options vested             $    153,000   $  1,406,350




                                      F-44



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE H - DEBT DERIVATIVE AND WARRANT LIABILITY

In accordance with SFAS 133  "Accounting for Derivative  Instruments and Hedging
Activities  and EITF 00-19  "Accounting  for  Derivative  Financial  Instruments
Indexed to, and  Potentially  Settled in, a  Company's  Own Stock",  the Company
accounted  for  identified  embedded  derivatives  (See Note A) and  warrants to
purchase its common stock that provide for the payment of liquidated  damages if
the stipulated registration deadlines were not met as liabilities.

As of the  date of this  filing,  the  registration  statement  has not yet been
declared  effective  by the SEC.  The Company  determined  the fair value of the
warrants using the Black-Scholes option pricing model. Assumptions regarding the
life were one to five years,  expected dividend yield of 0%, a risk free rate of
4.57 to 4.90%,  and a volatility of 127.02%.  The  determined  value of both the
warrants and the  underlying  embedded  derivatives as of September 30, 2006 was
$4,530,795.  The net  change in the fair  value of the  derivative  and  warrant
liability values from September 30, 2005 has been recorded as a gain from change
in  debt  derivative  and  warrant  liabilities  in the  consolidated  condensed
statement of operations.

NOTE I - INCOME TAXES

The Company has adopted Financial Accounting Standard No. 109 which requires the
recognition of deferred tax  liabilities  and assets for the expected future tax
consequences of events that have been included in the financial statement or tax
returns.  Under this method,  deferred tax liabilities and assets are determined
based on the difference between financial statements and tax bases of assets and
liabilities  using  enacted  tax  rates in  effect  for the  year in  which  the
differences  are  expected to reverse.  Temporary  differences  between  taxable
income  reported for  financial  reporting  purposes and income tax purposes are
insignificant.


                                      F-45



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE I - INCOME TAXES (continued)

At September 30, 2006, the Company has available for federal income tax purposes
a net operating loss carryforward of approximately $90,000,000,  expiring in the
year 2026,  that may be used to offset future  taxable  income.  The Company has
provided a valuation  reserve  against the full amount of the net operating loss
benefit,  since in the opinion of management  based upon the earnings history of
the Company;  it is more likely than not that the benefits will not be realized.
Due to  significant  changes in the Company's  ownership,  the future use of its
existing net operating losses may be limited.  Components of deferred tax assets
as of September 30, 2006 are as follows:



                                               
Non current:

Net operating loss carryforward                    $32,172,000
                                                  -------------
Valuation allowance                                (32,172,000)
                                                  -------------
Net deferred tax asset                            $        --
                                                  -------------


NOTE J-LOSS PER SHARE

The following  table  presents the  computation  of basic and diluted losses per
share:



                                                For the Year Ended                For the Year Ended
                                                September 30, 2006                September 30, 2005
                                            ----------------------------      --------------------------
                                                                        
Loss available for common shareholders      $               (2,410,237)       $             (67,109,519)
                                            ---------------------------       --------------------------
Basic and fully diluted loss per share      $                    (0.02)       $                   (1.05)
                                            ---------------------------       --------------------------
Weighted average common shares outstanding                  116,911,022                       63,917,009


Net loss per share is based upon the weighted average of shares of common  stock
outstanding

NOTE K- COMMITMENTS AND CONTINGENCIES

Operating Lease Commitments

The Company leases office space under operating  lease in Stony Brook,  New York
for  its  corporate  use  from  an  entity  controlled  by  significant   former
shareholder,  expiring in November 2007. In November  2005, the Company  vacated
the Los Angeles  facility  to  relocate to the new Stony Brook New York  address
(see Note K). Total lease rental  expenses for the years ended on September  30,
2006 and 2005, was $50,812 and $138,661, respectively.

Commitments for minimum rentals under non-cancelable lease at September 30, 2006
are as follows:



                                    
Year ended September 30, 2007          $       50,000
2008                                            4,167
                                       ---------------
                                       $       54,167


Employment and Consulting Agreements

The Company has consulting agreements with outside contractors,  certain of whom
are also Company stockholders. The Agreements are generally month to month.


                                      F-46



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE K- COMMITMENTS AND CONTINGENCIES (continued)

On July 15, 2005,  we entered into a  consulting  agreement  with Timpix for the
consulting  services of three former Biowell  employees,  Drs. Jun-Jei Sheu, Ben
Liang and  Johnson  Chen.  The  consulting  agreement  is for the shorter of two
years,  or until  all of the  consultants  have  obtained  a visa to work in the
United  States  and  execute  employment  agreements  with us.  Such  consulting
agreement  shall  automatically  renew for one year  periods  until  terminated.
Pursuant to the consulting  agreement,  we shall pay $47,000 per month, which is
apportioned  at $20,000 per month for Mr. Sheu,  $15,000 per month for Mr. Liang
and $12,000 per month for Mr.  Chen.  In the event that either of Messrs.  Sheu,
Liang or Chen  becomes  employed  by us,  the  monthly  consulting  fee shall be
reduced accordingly.  The Company has negotiated an agreement to restructure the
Consulting  Agreement,  whereby,  fees  owed to Timpix  from  July 2005  through
September 2006 will be waived. (See Note N).

Litigation

On or about  November  24,  2004,  Oceanic  Consulting,  S.A.  filed a complaint
against  the  Company  in the  Superior  Court  of the  State of New  York.  The
Complaint  alleges a breach of contract.  The Company and the Plaintiff  settled
the dispute and the Company  recorded the settlement  amount as of September 30,
2006.

On or about January 10, 2005, Stern & Co. filed a complaint  against the Company
in the United States  District Court for the Southern  District of New York. The
Complaint alleges a breach of contract.  Subsequent to the date of the financial
statements,  the Company and the  Plaintiff  settled the dispute and the Company
recorded the settlement amount as of September 30, 2006.

On April 29, 2005, Crystal Research Associates,  LLC obtained a default judgment
against us for $13,000 in the Superior  Court of New Jersey,  Middlesex  County.
The Company settled this matter in May 2006.

On or about  January 12,  2006,  James Paul Brown,  a former  consultant  to the
Company filed a complaint against the Company in the Superior Court of the State
of  California.  The Complaint  alleges a breach of contract.  Subsequent to the
date of the  financial  statements,  the Company and the  Plaintiff  settled the
dispute and the Company recorded the settlement amount as of September 30, 2006.

In January  2006, a former  employee of the Company  filed a complaint  alleging
wrongful  termination  against  the  Company.  The  former  employee  is seeking
$230,000 in damages.  The Company  believes that it has meritorious  defenses to
the  plaintiff's  claims and intends to  vigorously  defend  itself  against the
Plaintiff's claims. Management believes the ultimate outcome of this matter will
not have a  material  adverse  effect on the  Company's  consolidated  financial
position or results of operations.

On or about April 4, 2006,  the Company  filed a  complaint  against  Paul Reep,
Adrian  Butash,  John Barnett,  Chanty  Cheang,  Jaime Cardona  (former  Company
employees  and  officers),  and  Angela  Wiggins  ( a former  consultant  to the
Company)  in the  United  States  District  Court for the  Central  District  of
California. The  Company  has  asked the court to make a judicial  determination
that an agreement, which the Company did not authorize and which is the basis of
previously  disclosed  litigation  against  the  Company by Paul Reep,  a former
employee  of the  Company,  and a new action  filed by former  employees  of the
Company as set forth in the subsequent paragraph,  is invalid and unenforceable.
This matter is in its early stages.


                                      F-47



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE K- COMMITMENTS AND CONTINGENCIES (continued)

On or about April 17, 2006,  former  employees of the Company  filed a complaint
against the Company and certain of its current  officers  and  Directors  in Los
Angeles  County  Superior  Court.  The  Complaint  alleges a breach of contract,
violations  of  California  Labor Code and wrongful  termination  and is seeking
$950,000 in specified  damages,  plus fees and costs.  The  complaint  alleges a
breach of contract. The Company believes that it has meritorious defenses to the
plaintiff's   claims  and  intends  to  vigorously  defend  itself  against  the
Plaintiff's claims. Management believes the ultimate outcome of this matter will
not have a  material  adverse  effect on the  Company's  consolidated  financial
position or results of operations.

The Company is subject to other legal proceedings and claims, which arise in the
ordinary  course of its  business.  Although  occasional  adverse  decisions  or
settlements may occur, the Company  believes that the final  disposition of such
matters  should not have a material  adverse  effect on its financial  position,
results of operations or liquidity.

Registration of Company's Shares of Common Stock

Until the Company successfully  completes its pending registration  statement on
SEC Form SB-2, the Company is subject to liquidated damages (see Notes D and H).
In connection  with the $ 1,465,000  and $ 7,371,000  million  convertible  debt
financing  during the  quarters  ended  December  31,  2004 and March 31,  2005,
respectively,  the Company was obligated to deliver registered shares underlying
the  convertible  notes  and  warrants  by July  2005  (see  Note C).  Since the
registration  was not effective by July 2005,  the Company has been accruing and
charging to operations  the stipulated  liquidated  damages in shares of Company
stock accruing at the rate of 3.5% per month on the face value of the previously
issued convertible notes.  During the year ended September 30, 2006, the Company
has  paid  and  charged  to  operations  penalties  of  $773,958  in the form of
unregistered  shares of its common  stock to the former  note  holders,  and has
accrued and charged to operations an additional  $4,025,356  representing unpaid
penalties as of September 30, 2006

Matters Voluntarily Reported to the SEC and Securities Act Violations

We previously disclosed that we were investigating the circumstances surrounding
certain  issuances of 8,550,000 shares to employees and consultants in July 2005
(see  Note G),  and  have  engaged  our new  outside  counsel  to  conduct  this
investigation.  We have  voluntarily  reported  our  current  findings  from the
investigation  to the SEC,  and we have agreed to provide  the SEC with  further
information  arising  from the  investigation.  We believe  that the issuance of
8,000,000  shares to employees in July 2005 was  effectuated  by both our former
President and our former Chief Financial Officer/Chief Operating Officer without
approval of the Board of Directors.  These former  officers  received a total of
3,000,000 of these shares.  In addition,  it appears that the  8,000,000  shares
issued in July 2005, as well as an additional 550,000 shares issued to employees
and consultants in March, May and August 2005, were improperly  issued without a
restrictive legend stating that the shares could not be resold legally except in
compliance  with the Securities Act of 1933, as amended.  Our  investigation  is
continuing.  The members of our management who  effectuated  the stock issuances
that are being examined in the  investigation  no longer work for us. We believe
that  we  may  incur   significant   costs  and  expenses  in  continuing   this
investigation.  In the event that any of the exemptions from  registration  with
respect  to the  issuance  of the  Company's  common  stock  under  federal  and
applicable state securities laws were not available,  the Company may be subject
to claims by federal and state regulators for any such violations.  In addition,
if any  purchaser  of the  Company's  common  stock  were to  prevail  in a suit
resulting from a violation of federal or applicable  state  securities laws, the
Company  could be liable to return  the  amount  paid for such  securities  with
interest thereon, less the amount of any income received thereon, upon tender of
such securities,  or for damages if the purchaser no longer owns the securities.
As of the date of these  financial  statements,  the Company is not aware of any
alleged  specific  violation  or the  likelihood  of any claim.  There can be no
assurance that litigation  asserting such claims will not be initiated,  or that
the Company would prevail in any such litigation.


                                      F-48



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE K- COMMITMENTS AND CONTINGENCIES (continued)

The  Company is unable to  predict  the extent of its  ultimate  liability  with
respect to any and all future securities matters. The costs and other effects of
any future litigation, government investigations, legal and administrative cases
and proceedings,  settlements, judgments and investigations,  claims and changes
in this matter could have a material  adverse effect on the Company's  financial
condition and operating results

NOTE L - GOING CONCERN

The  accompanying  financial  statements  have been  prepared on a going concern
basis,  which  contemplates  the  realization of assets and the  satisfaction of
liabilities  in the  normal  course of  business.  As shown in the  accompanying
financial  statements during the period September 16, 2002 through September 30,
2006, the Company incurred a loss of $92,334,791. These factors among others may
indicate  that the Company  will be unable to continue as a going  concern for a
reasonable period of time.

The  Company's  existence  is  dependent  upon  management's  ability to develop
profitable  operations.  Management is devoting substantially all of its efforts
to developing DNA embedded biotechnology security solutions in the United States
and there can be no assurance  that the  Company's  efforts will be  successful.
However,  the planned  principal  operations have not commenced and no assurance
can be given that management's  actions will result in profitable  operations or
the resolution of its liquidity  problems.  The  accompanying  statements do not
include  any  adjustments  that might  result  should  the  Company be unable to
continue as a going concern.

In order to  improve  the  Company's  liquidity,  the  Company's  management  is
actively  pursuing   additional   equity  financing  through   discussions  with
investment bankers and private investors.  There can be no assurance the Company
will be successful in its effort to secure additional equity financing

NOTE M - RESTATEMENT

The Company has restated its financial  statements for the year ended  September
30, 2005 and the period from  September  16,  2002 (date of  inception)  through
September  30,  2005 by filing an amended  Form 10-KSB for the fiscal year ended
September 30, 2005 to correct the following  errors in the financial  statements
previously filed:

The Company did not recognize and record as a current period  expense,  warrants
issued to consultants and  non-employees  having a fair value of $7,358,568 (see
Note F).

The Company erroneously recorded the value of shares issued to a former Director
in exchange for previously incurred debt of $1,365,000 (see Note E).

The  Company did record the fair value of  warrants  issued to note  holders and
consultants  having  registration  rights,  $23,148,214 in the  aggregate,  as a
charge of operations and a liability in accordance with EITF 00-19 (see Note D).

The  Company  did not  record the gain of  $16,700,991  on  revaluation  for the
warrant liability as of September 30, 2005 (see Note D).

The results of the correction of these errors include:

    o   Increase in the Company's reported net loss for the year ended September
        30, 2005 by  $14,499,139 from $52,610,380 to $67,109,529.

    o   Increase in the Company's current  liabilities as of  September 30, 2005
        by $384,651 from  $2,595,897 to $2,980,548.


                                      F-49



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE M - RESTATEMENT (continued)

     o    Increase in the Company's  other  liabilities,  representing  warranty
          liabilities,  as of  September  30,  2005  by  $13,673,574  from $0 to
          $13,673,574.

The result of the Consolidated Balance Sheet restatement is:

Increase in accounts  payable and accrued expenses as of September 30, 2005 from
$2,185,468 to $2,570,119,  or $384,651.  The increase is a result of an error in
recognizing,  recording  and  accruing  the fair  value of  warrants  issued  to
non-employees and consultants of $384,651 as of September 30, 2005.

Increase in warrant  liability as of September 30, 2005 $0 to  $13,673,574.  The
increase  is a result of an error in  accounting  for the  issuance  of warrants
subject to a  registration  rights  agreement  that  provides for the payment of
liquidated  damages if the stipulated  registration  deadlines were not met (see
Note D). In accordance with SFAS 133 "Accounting for Derivative  Instruments and
Hedging  Activities,"  the  Company  revalued  the  warrants  issued  subject to
registration rights as of September 30, 2005 (see Note G). The fair value of the
warrants as of September  30, 2005 was  $13,673,574  and has been  recorded as a
warrant liability.

The following chart sets forth  reconciliations of the Company's  restatement of
the Consolidated Balance Sheet as of September 30, 2005.



                                                                                           September 30, 2005
                                                                                   (As Restated)     (As Reported)
                                                                                               
ASSETS
Current Assets:
Cash                                                                                $    31,190       $    31,190
Accounts receivable and advances                                                         12,429            12,429
                                                                                    -----------       -----------
Total current assets                                                                     43,619            43,619

Property, plant and equipment                                                            12,750            12,750
Less: accumulated depreciation                                                           (4,686)           (4,686)
                                                                                    -----------       -----------
                                                                                          8,064             8,064
Other Assets:
Deposits                                                                                 14,262            14,262
Intangible assets:
Patents, net of accumulated amortization                                                 22,493            22,493
Intellectual Property ,net of accumulated amortization                                9,094,082         9,094,082
                                                                                    -----------       -----------
                                                                                      9,130,837         9,130,837
                                                                                    -----------       -----------
                                                                                    $ 9,182,520       $ 9,182,520
                                                                                    ===========       ===========
LIABILITIES AND  DEFICIENCY IN STOCKHOLDERS' EQUITY
 Accounts payable and accrued liabilities                                           $ 2,570,119       $ 2,185,468
  Note payable - Related Party                                                          410,429           410,429
                                                                                    -----------       -----------
Total Current Liabilities                                                             2,980,548         2,595,897

Warrant liability                                                                    13,673,574                 -

Deficiency in Stockholders' Equity:
 Preferred Stock                                                                              6                 6
 Common Stock                                                                           112,230           112,230
 Common stock subscribed                                                                 20,000            20,000
 Additional Paid-In-Capital                                                          82,320,715        81,879,801
 Deficit Accumulated During Development Stage                                       (89,924,553)      (75,425,414)
 Total  (Deficiency)  in Stockholders' Equity                                        (7,471,602)        6,586,623
                                                                                    $ 9,182,520       $ 9,182,520



                                      F-50



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE M - RESTATEMENT (continued)

The result of the Consolidated Statement of Losses restatement is:

Increase in  selling,  general and  administrative  expenses  for the year ended
September 30, 2005 from $42,662,152 to $50,714,015,  or $8,051,863. The increase
is a result of an error in recognizing  and recording the fair value of warrants
issued to non-employees  and consultants of $6,402,264,  an error in recognizing
and recording the fair value of stock issued in settlement of debt of $1,365,000
and an error in recognizing  and recording  additional  compensation  expense of
$284,599.

Increase in selling,  general and  administrative  expenses  for the period from
September  16,  2002  (date  of  inception)  through  September  30,  2005  from
$63,483,689 to $71,535,604,  or $8,051,915. The increase is a result of an error
in recognizing and recording the fair value of warrants issued to  non-employees
and  consultants of $6,402,264,  an error in recognizing  and recording the fair
value  of stock  issued  in  settlement  of debt of  $1,365,000  and an error in
recognizing and recording of additional compensation expense of $284,599.

Increase in the net gain on the  revaluation  of warrant  liability for the year
ended September 30, 2005 from $0 to $16,700,990, or $16,700,990. The increase is
a result of an error in  accounting  for the  issuance of warrants  subject to a
registration  rights  agreement  that  provides  for the  payment of  liquidated
damages if the stipulated  registration  deadlines were not met (see Note D). In
accordance  with SFAS 133  "Accounting  for Derivative  Instruments  and Hedging
Activities,"  the Company  revalued the warrants  issued subject to registration
rights as of  September  30, 2005 (see Note G). The  difference  of  $16,700,991
between the fair value of the warrants as of September 30, 2005 and the previous
valuation has been recorded as a gain on revaluation of warrant liability.

Increase in the net gain on the revaluation of warrant  liability for the period
September  16, 2002 (date of  inception)  through  September 30, 2005 from $0 to
$16,700,990, or $16,700,990.  The increase is a result of an error in accounting
for the issuance of warrants  subject to a  registration  rights  agreement that
provides for the payment of liquidated  damages if the  stipulated  registration
deadlines were not met (see Note D). In accordance with SFAS 133 "Accounting for
Derivative  Instruments  and  Hedging  Activities,"  the  Company  revalued  the
warrants  issued  subject to  registration  rights as of September 30, 2005 (see
Note G). The difference of $16,700,991 between the fair value of the warrants as
of September 30, 2005 and the previous  valuation has been recorded as a gain on
revaluation of warrant liability.

Increase  in the  interest  expense for the year ended  September  30, 2005 from
$8,958,046 to $32,106,310, or $23,148,264.  The increase is a result of an error
in recording and recognizing the recording of the initial  valuation of warrants
issued in  conjunction  with  financing as a liability  subject to  registration
rights.

Increase  in the  interest  expense for the period  September  16, 2002 (date of
inception)  through  September  30, 2005 from  $10,736,232  to  $33,884,446,  or
$23,148,214.  The increase is a result of an error in recording and  recognizing
the initial  valuation of warrants  issued in  conjunction  with  financing as a
liability subject to registration rights.

The following chart sets forth  reconciliations of the Company's  restatement of
the  Consolidated  Statement of Losses for the year ended  September 30, 2005 as
well as the period from  September  16, 2002 (date of inception  of  development
stage) through September 30, 2005.


                                      F-51



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE M - RESTATEMENT (continued)



                                                                        For the  Period  September  16,  2002
                                                                        (date  of  Inception  of  Development
                                For the Year Ended September 30, 2005   Stage) through September 30, 2005
                                (As Restated)       (As Reported)       (As Restated)         (As Reported)
                                                                                    
         Operating Expenses:
         Selling  general  and
         administrative             $   50,714,017       $   42,662,152         $  71,535,604     $ 63,483,689

        Research and
         Development                       638,873              638,873               877,408          877,408

         Depreciation and
         amortization                      356,266              356,266               359,427          359,427

         Total Operating
         Expenses                       51,709,156           43,657,291            72,772,439       64,720,524

         Operating Income
         (Loss)                        (51,709,156)         (43,657,291)          (72,772,439)     (64,720,524)

         Net gain (loss) in
         fair value of debt
         derivative and
         warrant liabilities            16,700,990                   -             16,700,990                -

         Other income
         (expense)                           4,957               4,957                 31,342           31,342

         Interest income
         (expense)                     (32,106,310)          (8,958,046)          (33,884,446)     (10,736,232)

         Provision  for income
         taxes                                   -                   -                      -                -

         Net Income (Loss)          $  (67,109,569)      $  (52,610,380)        $ (89,924,553)    $(75,425,414)

         Basic and diluted
         loss per common
         share                      $        (1.05)      $        (0.82)        $       (2.53)    $      (2.12)

         Weighted average
         shares outstanding             63,517,009           63,517,009            35,590,871       35,570,559



The results of the restatement of the cash flow include:

Cash Flows From Operating Activities:

Increase in net loss for the year ended  September 30, 2005 from  $52,610,380 to
$67,109,519, or $14,499,139, resulting from items listed above.

Increase in net loss for the period from  September 16, 2002 (date of inception)
through  September 30, 2005 from  $75,425,414  to  $89,924,553,  or  $14,499,139
resulting from items listed above.

Increase in the non-cash value of warrants  issued to  consultants  for services
rendered for the year ended  September 30, 2005 from  $956,304 to 7,358,568,  or
$6,402,264.  The increase is a result of an error in  recognizing  and recording
the fair value of warrants to acquire our common stock  issued to  non-employees
and consultants and charged to operations (see Note G).


                                      F-52



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE M - RESTATEMENT (continued)

Increase in the non-cash value of warrants  issued to  consultants  for services
rendered  for the period from  September  16, 2002 (date of  inception)  through
September 30, 2005 from $956,304 to 7,358,568, or $6,402,264.  The increase is a
result of an error in  recognizing  and  recording the fair value of warrants to
acquire our common stock issued to non-employees  and consultants and charged to
operations (see Note G).

Increase in the non-cash income attributable to re-pricing the warrant liability
and  debt  derivatives  for  the  year  ended  September  30,  2005  from  $0 to
16,700,991,  or $16,700,991.  The increase is a result of an error in accounting
for the issuance of warrants  subject to a  registration  rights  agreement that
provides for the payment of liquidated  damages if the  stipulated  registration
deadlines were not met (see Note D). In accordance with SFAS 133 "Accounting for
Derivative  Instruments  and  Hedging  Activities,"  the  Company  revalued  the
warrants  issued  subject to  registration  rights as of September 30, 2005 (see
Note G).

Increase in the non-cash income attributable to re-pricing the warrant liability
and debt  derivatives for the period from September 16, 2002 (date of inception)
through September 30, 2005 from $0 to $16,700,991, or $16,700,991.  The increase
is a result of an error in accounting for the issuance of warrants  subject to a
registration  rights  agreement  that  provides  for the  payment of  liquidated
damages if the stipulated  registration  deadlines were not met (see Note D). In
accordance  with SFAS 133  "Accounting  for Derivative  Instruments  and Hedging
Activities,"  the Company  revalued the warrants  issued subject to registration
rights as of September 30, 2005 (see Note G).

Increase  in the  non-cash  financing  costs  attributable  to the  issuance  of
warrants  for the year  ended  September  30,  2005 from $0 to  $23,148,214,  or
$23,148,264.  The increase is a result of an error in recording and  recognizing
the recording of the initial  valuation of warrants  issued in conjunction  with
financing as a liability subject to registration rights.

Increase  in the  non-cash  financing  costs  attributable  to the  issuance  of
warrants  for the period from  September  16, 2002 (date of  inception)  through
September 30, 2005 from $0 to  $23,148,214,  or  $23,148,214.  The increase is a
result of an error in recording  and  recognizing  the  recording of the initial
valuation  of  warrants  issued in  conjunction  with  financing  as a liability
subject to registration rights.

Increase  in the  non-cash  cost of the fair value of common  stock  issued to a
related party in excess of previously incurred debt for the year ended September
30, 2005 from $0 to $1,365,000,  or  $1,365,000.  The increase is a result of an
error in recording and  recognizing the fair value of stock issued in settlement
of debt of $1,365,000 to a former Director of the Company (See Note E).

Increase  in the  non-cash  cost of the fair value of common  stock  issued to a
related  party  in  excess  of  previously  incurred  debt for the  period  from
September  16, 2002 (date of  inception)  through  September 30, 2005 from $0 to
$1,365,000, or $1,365,000. The increase is a result of an error in recording and
recognizing  the fair value of stock issued in  settlement of debt of $1,365,000
to a former  Director of the Company (See Note E). Increase in the non-cash cost
of the fair value of common stock issued in exchange for services for the period
from  September  16, 2002 (date of  inception)  through  September 30, 2005 from
$27,202,860 to $30,574,373,  or $3,371,513. The increase is a result of an error
in  recording  and  recognizing  the fair value of stock  issued for services by
employees  and  non-employees  and a  reclassification  common stock  previously
disclosed as stock issued pursuant to a employee stock option plan (See Note F).

Decrease in non-cash cost of common stock issued  pursuant to an employee  stock
option  plan for the year ended  September  30, 2005 from  $3,960,000  to $0, or
$3,960,000.  The  decrease  is a result of  reclassifying  common  stock  issued
pursuant to an employee stock option plan to common stock issued in exchange for
services (See Note F).


                                      F-53



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE M - RESTATEMENT (continued)

Decrease in non-cash cost of common stock issued  pursuant to an employee  stock
option plan for the period from  September 16, 2002 (date of inception)  through
September  30, 2005 from  $3,960,000  to $0, or  $3,960,000.  The  decrease is a
result of reclassifying common stock issued pursuant to an employee stock option
plan to common stock issued in exchange for services (See Note F).

Decrease  in  non-cash  cost of common  stock  cancelled-previously  issued  for
services  rendered  for the year ended  September  30, 2005 from  $1,078,270  to
$578,270,  or $500,000.  The  decrease is a result of an error in recording  and
recognizing  the fair  value of stock  issued  for  services  by  employees  and
non-employees that was subsequently cancelled (See Note F).

Decrease  in  non-cash  cost of common  stock  cancelled-previously  issued  for
services  rendered for the period from  September  16, 2002 (date of  inception)
through  the year ended  September  30, 2005 from  $1,363,845  to  $863,845,  or
$500,000.  The decrease is a result of an error in recording and recognizing the
fair value of stock issued for services by employees and non-employees  that was
subsequently  cancelled (See Note F).  Decrease in cost of capital  expenditures
for the year ended September 30, 2005 from $16,757 to $0, or $16,757.

The decrease is a result of  reclassifying  disbursement  for the acquisition of
equipment from operating activities to investing activities.

Increase in the amount of net  proceeds  from sale of  equipment  for the period
from September 16, 2002 (date of inception) through the year ended September 30,
2005 from $12,750 to $0,  or $12,750.  The increase is a result of reclassifying
net  proceeds  received  the sale of  equipment  from  operating  activities  to
investing activities.

Increase in change of accounts  payable  and  accrued  liabilities  for the year
ended September 30, 2005 from $297,755 to $663,748, or $365,993. The increase is
a result of an error in  recognizing,  recording  and accruing the fair value of
warrants  issued to  non-employees  and  consultants  as of September  30, 2005.
Increase in change of accounts  payable and accrued  liabilities  for the period
from  September  16, 2002 (date of  inception)  through  September 30, 2005 from
$2,053,464 to $2,419,457,  or $365,993.  The increase is a result of an error in
recognizing,  recording  and  accruing  the fair  value of  warrants  issued  to
non-employees and consultants as of September 30, 2005.

Cash  Flows From Investing Activities:

Increase  in the cash  provided  by the  sale of  equipment  for the year  ended
September 30, 2005 from $0 to $16,757,  or $16,757.  The increase is a result of
an error in  properly  classifying  proceeds  from the sale of  equipment  as an
investing activity.

Decrease in the cash used in capital  expenditures for the period from September
16, 2002 (date of inception)  through September 30, 2005 from $0 to $12,750,  or
$12,750.  The  decrease  is a result  of an error in  properly  classifying  net
disbursements in connection with acquiring  equipment as an investing  activity.
Cash Flows From Financing Activities:

Increase in the cash used in repayment of previously  incurred debt for the year
ended  September  30, 2005 from $0 to $24,854,  or  $24,854.  The  increase is a
result of an error in classifying repayment of debt as a financing activity.

Increase  in the cash used in  repayment  of  previously  incurred  debt for the
period from  September 16, 2002 (date of inception)  through  September 30, 2005
from $0 to $24,854, or $24,854. The increase is a result of an error in properly
classifying repayment of debt as a financing activity.


                                      F-54



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE M - RESTATEMENT (continued)

Increase in proceeds  from the sale of options to acquire the  Company's  common
stock for the year  ended  September  30,  2005 from  $70,750  to  $102,750,  or
$32,000.  The  increase  is a result of an error in  recognizing  and  recording
$32,000 of proceeds  from the  exercise  of options as issuance of common  stock
(see Note F).

Increase in proceeds  from the sale of options to acquire the  Company's  common
stock for the  period  from  September  16,  2002  (date of  inception)  through
September  30, 2005 from  $311,750 to  $343,750,  or $32,000.  The increase is a
result of an error in  recognizing  and  recording  $32,000 of proceeds from the
exercise of options as issuance of common stock (see Note F).

Decrease  in  proceeds  from  subscription  of common  stock for the year  ended
September  30, 2005 from  $9,079,000  to $0, or  $9,079,000.  The  decrease is a
result of an error in  recognizing  and recording the proceeds from the issuance
of convertible  notes that were  exchanged for the Company's  common stock ( see
Note D).  Decrease in proceeds from  subscription of common stock for the period
September  16,  2002  (date  of  inception)  through  September  30,  2005  from
$9,204,000  to $0,  or  $9,204,000.  The  decrease  is a  result  of an error in
recognizing  and recording the proceeds from the issuance of  convertible  notes
that were exchanged for the Company's common stock ( see Note D).

The following chart sets forth  reconciliations of the Company's  restatement of
the  Consolidated  Statement of Cash Flows for the year ended September 30, 2005
as well as the period  September  16,  2002 (date of  inception  of  development
stage) through September 30, 2005.



                                                               For the Period September 16, 2002
                                For the Year Ended September   (date of Inception of Development
                                          30, 2005             Stage) through September 30, 2005

                                (As Restated)   (As Reported)    (As Restated)       (As Reported)
                                                                           
   Cash flows from
   Operating Activities:

   Net income (loss)              $(67,109,519)  $(52,610,380)      $ (89,924,553)      $ (75,425,414)

   Adjustment to reconcile
   net loss to net cash used
   in operating activities:

   Amortization and
   depreciation                        350,107        350,107             353,268             353,268

   Organization expenses                     -              -              88,500              88,500

   Preferred share issued in
   exchange for services                     -              -           1,500,000           1,500,000

   Warrants issued to
   consultants in exchange
   for services rendered             7,358,568        956,304           9,378,430           2,976,166

   Income attributable  to
   repricing of warrant and
   debt derivatives                (16,700,991)             -         (16,700,991)                  -

   Financing costs
   attributable to issuance
   of warrants                      23,148,214              -          23,148,214                   -




                                      F-55



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE M - RESTATEMENT (continued)



                                                               For the Period September 16, 2002
                                For the Year Ended September   (date of Inception of Development
                                          30, 2005             Stage) through September 30, 2005

                                (As Restated)   (As Reported)    (As Restated)       (As Reported)
                                                                              
   Amortization  of beneficial
   conversion feature-
   convertible notes                 8,836,000      8,836,000          10,461,000          10,461,000

   Amortization of
   capitalized financing costs               -              -                   -                   -

   Amortization of debt
   discount attributable to
   convertible notes                         -              -                   -                   -

   Fair value of common  stock
   issued to related  party in
   excess of previously
   incurred debt                     1,365,000              -           1,365,000                   -

   Common stock issued in
   exchange for services            18,176,641     14,805,128          30,574,373          27,202,860

   Common stock issued to ESOP               -      3,960,000                   -           3,960,000

   Common stock exchanged for
   intellectual property in
   connection with costs of
   acquiring intangible
   assets                           14,689,100     14,689,100          14,689,100          14,689,100

   Common stock issued as
   penalty in connection with
   financing                           776,529        776,529             776,529             776,529

   Common stock canceled-
   previously issued for
   services rendered                  (578,270)    (1,078,270)           (863,845)         (1,363,845)

   Change in assets and
   liabilities:
   Increase in accounts
   receivable                          (12,429)       (12,429)            (12,429)            (12,429)

   Increase in prepaid assets
   and deposits                          9,297          9,297            (14,262)            (14,262)

   Decrease in other assets                  -              -            (13,890)            (13,890)



                                      F-56



                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE M - RESTATEMENT (continued)



                                                                      For the Period September 16, 2002
                                For the Year Ended September 30,      (date of Inception of Development
                                              2005                    Stage) through September 30, 2005

                                (As Restated)       (As Reported)     (As Restated)      (As Reported)
                                                                                   
   Capital expenditures                          -            16,757                  -             (12,750)
   Increase  (Decrease) in due
   related parties                        (111,943)         (111,943)            40,753              40,753

  Increase (decrease) in
   accounts payable and
   accrued liabilities                     663,748           297,755          2,419,457           2,053,464

   Net cash used in  operating
   activities                           (9,139,948)       (9,116,045)       (12,735,346)        (12,740,950)

   Cash flows  from  investing
   activities:

   Payments for patent filing               (4,347)           (4,347)           (25,698)            (25,698)

   Capital expenditures
   (disposals)                              16,757                 -            (12,750)                  -

   Net cash used in investing
   activities                               12,410            (4,347)           (38,448)            (25,689)

   Cash Flows From Financing
   Activities:

   Proceeds from sale of
   common stock, net of
   costs                                         -                 -            432,000            432,000

   Proceeds from  subscription
   of common stock                               -         9,079,000                  -           9,204,000

   Proceeds form issuance of
   convertible notes                     9,079,000                 -          9,204,000                   -

   Proceeds from sale of
   options                                 102,750            70,750            343,750             311,750

   Payment of debt                         (24,854)                -            (24,854)                  -
   Proceeds from loans                           -                 -          2,750,000           2,750,000

   Advances from (to)
   shareholders                                  -                 -            100,088             100,088

   Cash provided by financing
   activities                            9,156,896         9,149,750         12,804,984          12,797,838

   Net (decrease)  increase in
   cash and cash equivalents                29,358            29,358             31,190              31,190

   Cash, beginning of period                 1,832             1,832                  -                   -

   Cash and cash  equivalents,
   end of period                         $  31,190          $ 31,190          $  31,190             $31,190




                                      F-57




                            APPLIED DNA SCIENCES, INC
                          (a development stage company)
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2006

NOTE N - SUBSEQUENT EVENTS

On November 28, 2006,  the Company  issued 180,000 shares of its common stock as
settlement of the outstanding related party note payable of $410,429 and related
accrued interest of $8,884 (See Note E)

On November 13, 2006, the Company  restructured  its  consulting  agreement with
Timpix  International  Limited ("Timpix" for consulting services of three former
Biowell   employees.   Drs  Jun-Jei  Sheu,  Ben  Liang  and  Johnson  Chen.  The
restructured  consulting  agreement expires on July 15, 2007 or until all of the
consultants  have  obtained  a visa to work in the  United  States  and  execute
employment  agreements with the Company.  The revised consulting agreement shall
automatically  renew for one year  periods  until  terminated.  Pursuant  to the
agreement,  the Company is obligated to pay  $120,000,  $100,000 and $80,000 per
year  pro-rated  for each  week,  or part  thereof,  of time spent in the United
States  providing full time services for Drs Jun-Jei Sheu, Ben Liang and Johnson
Chen,  respectively.  The  Company is  obligated  to provide a  corporate  house
available for the Consultants  while working in the United States.  All previous
fees incurred through November 13, 2006 have been waived. (See Notes E and K)










                                      F-58



ITEM 8. CHANGES IN AND DISAGREEMENTS WITH ACCOUNTANTS ON ACCOUNTING AND
FINANCIAL DISCLOSURE.

       There  have   been  no   disagreements   between   the  Company  and  its
accountants as to matters which require disclosure.

Item 8A -- Controls and Procedures

       a) Evaluation of  Disclosure  Controls  and  Procedures.  As of September
30,  2006,  the  Company's  management  carried  out an  evaluation,  under  the
supervision  of the  Company's  Chief  Executive  Officer (who is its  principal
executive officer and principal financial officer),  of the effectiveness of the
design  and  operation  of the  Company's  system  of  disclosure  controls  and
procedures  pursuant to the Securities and Exchange Act and Rules  13a-15(e) and
15d-15(e) thereunder.  Based upon that evaluation, the Company's Chief Executive
Officer concluded that the Company's disclosure controls and procedures were not
effective,  as of the date of their  evaluation,  for the purposes of recording,
processing, summarizing and timely reporting material information required to be
disclosed in reports filed by the Company under the  Securities  Exchange Act of
1934.

       As previously   disclosed  in our Current  Reports on Form 8-K,  filed on
May 18, 2006 and October 2, 2006,  and Note M to our  accompanying  consolidated
financial  statements,  as a result of comments raised by the SEC, we determined
that accounting errors were made in connection with

       o     accounting for  and disclosing  the  fair   value of  warrants  and
             options  to acquire our common stock issued  to  non-employees as a
             current period expense;

       o     accounting for and disclosing  the fair value of shares issued to a
             former Director in exchange for previously incurred debt;

       o     accounting for and disclosing the fair  value of warrants issued to
             note holders and consultants having  registration rights; and

       o     accounting   for  and  disclosing  the   revaluation   for  warrant
             liabilities as of each reporting period.

       Based  on  the  impact  of  the  aforementioned  accounting  errors,   we
determined to restate our consolidated  financial statements as of September 30,
2005  and the year  then  ended  and the  period  September  16,  2002  (date of
inception as a development stage company) through September 30, 2005.

       b) Changes in internal  controls.  Except  as described below, there were
no changes in internal  controls over financial  reporting that occurred  during
the  period  covered  by this  report  that  have  materially  affected,  or are
reasonably  likely to materially  effect,  our internal  control over  financial
reporting.

Significant Deficiencies In Disclosure Controls and Procedures or Internal
Controls

         In addition to the remedial measures undertaken during the three months
ended June 30, 2006 we previously  disclosed in our Current Report on Form 8-K/A
filed on May 18,  2006,  that we have  subsequently  implemented  the  following
additional measures to address the identified material weaknesses:

       o     We reviewed all convertible  securities to  identify any securities
             that   may   have  embedded   beneficial  conversion    features or
             derivatives; and

       o     We   have  improved   the   supervision    and   training  of   our
             accounting  staff  to   understand   and    implement    applicable
             accounting requirements, policies and procedures  applicable to the
             accounting   and   disclosure    of   convertible   securities  and
             derivatives.

Item 8B -- Other Information
       None.

                                       33





ITEM 9. DIRECTORS, EXECUTIVE OFFICERS, PROMOTERS AND CONTROL PERSONS.

       The  following  is a list  of our   directors,  executive   officers  and
significant employees.




            Name                      Age                  Title                 Board of Directors

                                                                        
        Jun-Jei Sheu                  40           Chairman of the Board              Director
      James A. Hayward                53          Chief Executive Officer             Director
      Sanford R. Simon                63                                              Director
        Yacov Shamash                 56                                              Director
   Ming-Hwa Benjamin Liang            43          Secretary and Strategic
                                               Technology Development Officer



       Directors  are   elected  to serve   until  the next  annual  meeting  of
stockholders  and until their  successors are elected and  qualified.  Currently
there are four seats on our board of directors.

       Currently,  the   members of our  board of  directors  do not receive any
fees for being a director or attending  meetings.  Our directors are  reimbursed
for  out-of-pocket  expenses  relating to attendance  at meetings.  Officers are
elected by the Board of Directors and serve until their successors are appointed
by the Board of Directors. Biographical resumes of each officer and director are
set forth below.

Chairman of the Board - Jun-Jei Sheu

       On July 15,   2005, Dr. Jun-Jei Sheu was   appointed  as a  director  and
elected  Chairman by the board of directors.  Since November  2000, Dr. Sheu has
been the Chairman of Biowell  Technology Inc.  Between  November 2000 and August
2005,  Dr. Sheu was  the Chief  Executive  Officer  of Biowell  Technology  Inc.
Dr.  Sheu  received  his  bachelor's  degree in  Biology  from  Fu-Jen  Catholic
University  in  1988,  his Masters  degree  in  Biology  from   Fu-Jen  Catholic
University  in 1990,  his  Ph.D in  Life Sciences  from  Intermural  of Academia
Sinica &  National  Defense  Medical  Center  in  1996  and his MBA from   South
Australia University in 2000. Dr. Sheu is also a director  of Biowell Technology
(S) Pte Ltd., a Singapore company,  Biotechcard   International Pte (S)  Ltd.  a
Singapore company, Yan Zhan  Life  Technology  &  Marketing   Inc.,  a Taiwanese
company and Biowell  Technology  (Suzhou)  Co.  Ltd., a Chinese company,  all of
which are biotechnology companies.

Chief Executive Officer - James A. Hayward

       Dr. James A. Hayward  has been our  Chief  Executive  Officer since March
17, 2006, prior to which he was acting Chief Executive  Officer since October 5,
2005.  Since January 2006, Dr. Hayward has served as the part-time  President of
Dr. Suwelack Skin and Healthcare, a private company that manufactures biological
matrices for wound care and skin care in Billerbeck,  Germany.  Since June 2004,
Dr.  Hayward  has  been  the  Chairman  of  Evotope  Biosciences,  Inc.,  a drug
development  company based in Stony Brook, New York. Since 2001, Dr. Hayward has
been a director of Q-RNA,  Inc., a biotech  company based in New York, New York.
Since 2000, Dr.  Hayward has been a General  Partner of Double D Venture Fund, a
venture  capital firm based in New York,  New York.  Between 1990 and July 2004,
Dr.  Hayward was the  Chairman,  President and CEO of The  Collaborative  Group,
Ltd., a provider of products and services to the  biotechnology,  pharmaceutical
and  consumer-product  industries  based in Stony Brook,  New York.  Dr. Hayward
received  his  bachelor's  degree  in  Biology  and  Chemistry  from  the  State
University of New York at Oneonta in 1976,  his Ph.D. in Molecular  Biology from
the State  University of New York at Stony Brook in 1983, and an honorary Doctor
of Science from Stony Brook in 2000. Dr. Hayward has served on the boards of the
Council  on  Biotechnology,   the  Long  Island  Association,  the  Stony  Brook
Foundation,  the Research  Foundation  of State  University of New York Board of
Directors, the New York Biotechnology Association, the Long Island Life Sciences
Initiative and the Ward Melville Heritage Organization.

Director - Yacov Shamash

       Dr.  Yacov  Shamash  has been a  member of the board of  directors  since
March 17, 2006.  Dr.  Shamash is Vice  President of Economic  Development at the
State University of New York at Stony Brook. Since 1992, he has been the Dean of
Engineering  and Applied  Sciences and the Harriman  School for  Management  and
Policy  at the  University,  and  Founder  of the  New  York  State  Center  for
Excellence in Wireless Technologies at the University. Dr. Shamash developed and
directed   the   NSF  Industry/University    Cooperative   Research  Center  for
the Design  of   Analog/Digital    Integrated     Circuits    from     1989   to
1992    and   also    served  as  Chairman  of  the   Electrical   and  Computer

                                       34





Engineering    Department  at    Washington    State     University  from   1985
until 1992. Dr. Shamash also serves on the  Board  of  Directors  of   Keytronic
Corp.,   Netsmart   Technologies,  Inc.,   American  Medical  Alert Corp.,   and
Softheon Corp.

Director - Sanford R. Simon

       Dr. Sanford R. Simon  has been a member  of the board of directors  since
March 17, 2006. Dr. Simon has been a Professor of Biochemistry, Cell Biology and
Pathology at Stony Brook since 1997.  He joined the faculty at Stony Brook as an
Assistant  Professor in 1969 and was promoted to Associate Professor with tenure
in 1975.  Dr. Simon was a member of the Board of Directors of The  Collaborative
Group from 1995 to 2004. From 1967 to 1969 Dr. Simon was a Guest Investigator at
Rockefeller University.  Dr. Simon received a B.A. in Zoology and Chemistry from
Columbia University in 1963, a Ph.D. in Biochemistry from Rockefeller University
in 1967, and studied as a postdoctoral fellow with Nobel Prize winner Max Perutz
in Cambridge, England.

Secretary and Strategic Technology Development Officer - Ming-Hwa Benjamin Liang

       Ming-Hwa   Benjamin   Liang  has  been  our   Secretary   and   Strategic
Technology  Development  Officer   since October  2005.  Between  May  1999  and
September   2005, Mr. Liang has been the director of research and development at
Biowell   Technology   Inc. Mr. Liang received a B.S.  in  Bio-Agriculture  from
Colorado   State   University  in  1989, a   M.S. in    Horticulture   from  the
University of Missouri at Columbia in 1991, his Ph.D.  in Plant Science from the
University  of  Missouri  at Columbia  in 1997 and his  LL.M.  in   Intellectual
Property Law from Shih Hsin  University, Taiwan in 2004.

Code of Ethics

       The  Company has not yet  adopted a Code of Ethics.  The Company's  Board
of Directors  is in the process of  reviewing  whether it should adopt a Code of
Ethics given the scale and character of its operations at this time.

COMPLIANCE WITH SECTION 16(A) OF THE SECURITIES EXCHANGE ACT OF 1934

       Since we are governed  under  Section  15(d) of the  Exchange Act, we are
not required to file reports of executive officers and directors and persons who
own more  than 10% of a  registered  class of the  Company's  equity  securities
pursuant to Section 16(a) of the Exchange Act.

                                       35





ITEM 10. EXECUTIVE COMPENSATION.

       The following  table sets  forth the  compensation  paid by us during the
fiscal  years ended  September  30, 2006,  2005 and 2004 to our Chief  Executive
Officer and our former Chief  Executive  Officer.  No  executive  officer of the
Company  received total salary and bonus in excess of $100,000 during the fiscal
year ended September 30, 2006.




                                                 SUMMARY COMPENSATION TABLE

                                                                        Long-Term Compensation

                                    Annual Compensation                   Awards             Payouts

                                                                  Restricted   Securities
   Name and                 Annual     Annual     Other Annual    Stock        Underlying     LTIP        All Other
   Principal      Fiscal    Salary     Bonus      Compensation    Awards       Options/SARs   Payments    Compensation
    Position        Year       ($)      ($)         ($)             ($)           (#)          ($)           ($)

                                                                                      
James A.            2006        0          0            0            0         7,500,000        0             0
Hayward,            2005        0          0            0            0             0            0             0
CEO (1)             2004        0          0            0            0             0            0             0



(1) James A. Hayward was appointed as  Chief  Executive  Officer  on  October 5,
2005.


       The Board of  Directors, in  their discretion,  may award stock and stock
options to key  executives for achieving  financing or  expenditure  guidelines,
meeting  our  business  plan  objectives,  as part  of  their  compensation  for
employment or for retention purposes.

Employment Agreements

       None.

                                       36





ITEM 11. SECURITY  OWNERSHIP  OF CERTAIN  BENEFICIAL  OWNERS  AND MANAGEMENT AND
RELATED STOCKHOLDER MATTERS.

       The following  table sets forth  certain information regarding the shares
of our common stock  beneficially  owned as of September  30, 2006,  (i) by each
person who is known to us to  beneficially  own more than 5% of the  outstanding
common stock,  (ii) by each of the executive  officers  named in the table under
"Executive Compensation" and by each of our directors, and (iii) by all officers
and directors as a group.





 NAME AND ADDRESS OF                      TITLE OF        NUMBER OF          PERCENTAGE
  BENEFICIAL OWNER                         CLASS         SHARES OWNED         OF CLASS
                                                             (1)                 (2)

                                                                       
Jun-Jei Sheu                               Common Stock    3,113,695 (3)         2.57%
25 Health Sciences Drive, Suite 113
Stony Brook, New York 11790


James A. Hayward                           Common Stock    7,759,400 (4)         6.40%
25 Health Sciences Drive, Suite 113
Stony Brook, New York 11790




Yacov Shamash                              Common Stock      250,000 (5)         0.21%
25 Health Sciences Drive, Suite 113
Stony Brook, New York 11790


Sanford R. Simon                           Common Stock      250,000 (5)         0.21%
25 Health Sciences Drive, Suite 113
Stony Brook, New York 11790


All directors and officers as a group      Common Stock   11,373,095 (6)        9.39%
(4 persons)




(1)   Beneficial ownership is determined in accordance with the rules of the SEC
      and  generally  includes  voting or  investment  power with respect to the
      shares  shown.  Except as  indicated  by footnote and subject to community
      property laws where applicable,  to our knowledge,  the stockholders named
      in the table have sole  voting and  investment  power with  respect to all
      common  stock  shares  shown as  beneficially  owned by them.  A person is
      deemed to be the  beneficial  owner of securities  that can be acquired by
      such  person  within 60 days upon the  exercise  of  options,  warrants or
      convertible securities (in any case, the "Currently Exercisable Options").
      Each  beneficial  owner's  percentage  ownership is determined by assuming
      that the Currently  Exercisable  Options that are held by such person (but
      not those held by any other person) have been exercised and converted.

(2)   Based upon 121,162,385 shares issued and outstanding on December 29, 2006.

(3)   Includes  315,859 shares owned by his wife and 254,354 shares owned by his
      minor children.  Also includes 1,500,000 shares owned by Biowell, of which
      company Dr. Sheu is deemed a beneficial owner.

(4)   Includes 7,500,000 shares underlying currently exercisable warrants.

(5)   Includes 250,000 shares underlying a currently exercisable warrant.

(6)   Includes 8,000,000 shares underlying currently exercisable options and
      warrants.

                                       37





EQUITY COMPENSATION PLAN INFORMATION

2002 Professional/Employee/Consultant Compensation Plan

       In November of 2002, we  created a special  compensation  plan to pay the
founders,  consultants and  professionals  that had been  contributing  valuable
services to us during the previous nine months. This plan, under which 2,000,000
shares  of  our  common  stock  were  reserved  for  issuance,   is  called  the
Professional/Employee/Consultant  Compensation Plan (the  "Compensation  Plan").
Share and option issuances from the Compensation  Plan were to be staggered over
the  following  six to eight  months,  and  consultants  that  were to  continue
providing  services  thereafter  either  became  employees  or received  renewed
contracts from us in July of 2003, which contracts  contained a more traditional
cash  compensation  component.  Each qualified and eligible  recipient of shares
and/or options under the Compensation  Plan received  securities in lieu of cash
payment for services. Each recipient agreed, in his or her respective consulting
contract with us, to sell a limited number of shares monthly.

       In our financial  statements,  shares that  are disclosed  as having been
issued from  November  2002  through June 30, 2003 that were valued at $0.65 per
share were shares  issued from the  Compensation  Plan on the basis of contracts
executed at that time for previously  rendered services.  Common Stock disclosed
as being issued in exchange for cash at $1.00 per share  represent  options that
were exercised under the Compensation Plan. In December of 2004, we adjusted the
exercise price of options under the Compensation  Plan to $0.60 per share. As of
October 31, 2006, a total of 1,440,000 shares have been issued from, and options
to purchase  560,000  shares have been issued under the  Compensation  Plan, and
options to purchase 264,000 shares have been exercised as of that date.

2005 Incentive Stock Plan

       On January 26, 2005, the Board  of Directors,  and  on February 15, 2005,
the  holders  of a  majority  of the  outstanding  common  stock of the  Company
approved the Company's 2005 Incentive  Stock Plan and authorized the issuance of
16,000,000 shares of common stock as stock awards and stock options  thereunder.
The 2005 Incentive Stock Plan is designed to retain directors,  executives,  and
selected employees and consultants by rewarding them for making contributions to
our success with an award of shares of our common stock. As of October 31, 2006,
a total of 8,550,000  shares have been issued and options to purchase  5,660,000
shares have been granted under the 2005 Incentive Stock Plan.

       During the  months of  March,  May,  July and  August  2005,  we issued a
total  of  8,550,000  shares  of our  common  stock  to  certain  employees  and
consultants  pursuant to the 2005  Incentive  Stock Plan. We engaged our outside
counsel  to  conduct  an  investigation  of the  circumstances  surrounding  the
issuance  of these  shares.  On April 26,  2006,  we  voluntarily  reported  the
findings from this  investigation to the SEC, and agreed to provide the SEC with
further information arising from the investigation. We believe that the issuance
of 8,000,000 shares to employees in July 2005 was effectuated by both our former
President and our former Chief Financial Officer/Chief Operating Officer without
approval of our board of directors.  These former  officers  received a total of
3,000,000 of these shares.  In addition,  it appears that the  8,000,000  shares
issued in July 2005, as well as an additional 550,000 shares issued to employees
and consultants in March, May and August 2005, were improperly  issued without a
restrictive legend stating that the shares could not be resold legally except in
compliance  with the  Securities  Act of 1933,  as  amended.  The members of the
Company's  management who effectuated the stock issuances no longer work for the
Company.  These shares were not registered  under the Securities Act of 1933, or
the  securities  laws of any state,  and we believe that certain of these shares
may have been sold on the open  market,  though we have been unable to determine
the  magnitude of such sales.  If  violations  of  securities  laws  occurred in
connection  with the  resale of  certain  of these  shares,  the  employees  and
consultants  or persons who  purchased  shares from them may have rights to have
their purchase  rescinded or other claims against us for violation of securities
laws,  which  could harm our  business,  results of  operations,  and  financial
condition.

                                       38







           Plan Category               Number of Securities      Weighted-Average          Number of Securities
                                        to be Issued Upon        Exercise Price of       Remaining Available for
                                           Exercise of         Outstanding Options,       Future Issuance Under
                                       Outstanding Options,     Warrants and Rights     Equity Compensation Plans
                                       Warrants and Rights                                (Excluding Securities
                                                                                         Reflected in Column (a))


                                               (a)                      (b)                           (c)

                                                                                  

Professional/Consultant/Employee             296,000                   $0.60                           0
Stock and Stock Option Compensation
Plan approved in November 2002


2005 Incentive Stock Plan approved           5,660,000                 $0.47                       1,790,000
on January 26, 2005




               Total                        5,956,000                  $0.59                       1,790,000




                                       39





ITEM 12. CERTAIN RELATIONSHIPS AND RELATED TRANSACTIONS.

       On  November  3,  2005,  we issued  and  sold  a  promissory  note in the
principal  amount of $550,000 to Allied  International  Fund,  Inc.  ("Allied").
Allied in turn  financed  a  portion  of its  making  of this loan by  borrowing
$450,000 from certain  persons,  including  $100,000  from James A.  Hayward,  a
director  and our Chief  Executive  Officer.  The terms of the  promissory  note
provided  that we  issue  upon the  funding  of the note  warrants  to  purchase
5,000,000  shares of our common stock at an exercise price of $0.50 per share to
certain  persons  designated  by Allied.  On  November  9, 2005,  we issued nine
warrants to Allied and eight other persons to purchase an aggregate of 5,500,000
shares  of our  common  stock at an  exercise  price of $0.50 per  share.  These
warrants  included a warrant to  purchase  1,100,000  shares  that was issued to
James A. Hayward, a director and our Chief Executive Officer.  Additionally,  we
paid $55,000 in cash to VC Arjent,  Ltd. for its services as the placement agent
with respect to this  placement.  All principal and accrued but unpaid  interest
under the promissory note was paid in full shortly after the closing of and from
the proceeds of a private placement we completed on March 8, 2006.

       In  February  2005,  we  entered  into  an  agreement  with The  Research
Foundation  of the State  University of New York acting on behalf of Stony Brook
University ("The Research Foundation") to support a project entitled "A Chimeric
Method and System  for DNA  Encryption  and  Authentication."  Pursuant  to this
agreement,  the Research  Foundation made a grant of $79,005.77 to us to support
the project,  which amount is payable over six months.  Upon  approval  from The
Research  Foundation,  we will receive an additional  grant of $80,000,  payable
over one year. On July 31, 2006,  we received an additional  grant of $79,005.07
for use by us during the period  from July 1, 2006 to July 1, 2007.  The general
objective of this project is to further  extend the  application of chimeric DNA
methodologies  in different  product  applications  such as ink and thread.  Dr.
Sanford R. Simon,  Professor of  Biochemistry,  Cell  Biology,  and Pathology at
Stony  Brook  University  and one of our  directors,  will lead this  project on
behalf of Stony Brook University together with Dr. Benjamin Liang, our Strategic
Technology Development Officer.

         On March 29,  2006 and April 13,  2006,  we  borrowed  $200,000  in the
aggregate, at a rate of 7.5% per annum, from BioCogent whose President and Chief
Executive Officer and sole stockholder is James A. Hayward, one of our directors
and our Chief  Executive  Officer.  These  loans were due and  payable  upon the
earlier  to occur of (1) the  close of  business  on June 30,  2006,  or (2) the
closing of the  issuance  and sale of our  securities  for gross  proceeds of at
least  $250,000.  The  proceeds  from the loans were used for general  corporate
purposes.  The note issued on March 29,  2006 was repaid  with  interest in May,
2006. The note issued on April 13, 2006 was repaid with interest in June, 2006.

         In May, 2006, we signed a Business  Development  and Trademark  License
Agreement with Dr. Suwelack Skin & Health Care AG ("Dr. Suwelack") providing Dr.
Suwelack  170,000 shipping labels marked with the SigNature logo using SigNature
DNA  Ink,  and a  limited,  non-exclusive,  non-transferable  right  to use  the
SigNature logo via these labels on its packaging.  Dr. Suwelack agreed to pay us
(euro)15,000  for these labels and rights.  (euro)7,500  of this amount was paid
upon signing of the agreement  and the remaining 50% is due upon Dr.  Suwelack's
receipt of the  shipping  labels.  James A.  Hayward,  a director  and our Chief
Executive Officer, serves on Dr. Suwelack's board of directors. BioCogent, whose
President  and Chief  Executive  Officer and sole  stockholder  is Dr.  Hayward,
provides consulting services to Dr. Suwelack

       On  September 1, 2006,  we  issued  warrants  to purchase an aggregate of
18,400,000  shares of our common  stock  exercisable  for a period of five years
commencing  on  September  1, 2006,  at a price of $0.09 per share,  the closing
price of our common  stock on the date of issuance.  Each such warrant  provides
its  holder  unlimited  piggyback   registration  rights  with  respect  to  any
registration  statement we file. These warrants include a warrant to purchase an
aggregate  of  6,400,000  shares of our common stock that was issued to James A.
Hayward, a director and our Chief Executive  Officer.  The Company also issued a
warrant to  purchase  250,000  shares of our common  stock to each of Sanford R.
Simon and Yacov  Shamash,  each of whom is one of our  directors.  Each of these
warrants is exercisable for a period  commencing on March 17, 2007, and expiring
on August 31,  2011,  at a price of $0.09 per share,  the  closing  price of our
common  stock on the date of  issuance of the  warrants,  and provide its holder
unlimited  piggyback  registration  rights  with  respect  to  any  registration
statement filed by the Company.

       We have no  policy regarding  entering into  transactions with affiliated
parties.

                                       40





ITEM 13. EXHIBITS.

Exhibit     Description

2.1         Articles  of Merger of  Foreign  and  Domestic  Corporations,  filed
            December 19, 1998 with the Nevada  Secretary  of State,  filed as an
            exhibit  to  the  annual  report  on  Form  10-KSB  filed  with  the
            Commission  on  December  29,  2003  and   incorporated   herein  by
            reference.

3.1         Articles of  Incorporation  of DCC  Acquisition  Corporation,  filed
            April  20,  1998 with the  Nevada  Secretary  of State,  filed as an
            exhibit  to  the  annual  report  on  Form  10-KSB  filed  with  the
            Commission  on  December  29,  2003  and   incorporated   herein  by
            reference.

3.2         Articles  of   Amendment  of  Articles  of   Incorporation   of  DCC
            Acquisition  Corp.  changing  corporation name to ProHealth  Medical
            Technologies, Inc.

3.3         Certificate of Designations,  Powers,  preferences and Rights of the
            Founders' Series of Convertible Preferred Stock, filed as an exhibit
            to the annual  report on Form 10-KSB  filed with the  Commission  on
            December 29, 2003 and incorporated herein by reference.

3.4         Articles of  Amendment of Articles of  Incorporation  of Applied DNA
            Sciences,  Inc.  increasing  the par value of the  company's  common
            stock, filed on December 3, 2003 with the Nevada Secretary of State,
            filed as an exhibit to the annual  report on Form 10-KSB  filed with
            the  Commission  on  December  29, 2003 and  incorporated  herein by
            reference.

3.5         By-Laws of Applied DNA  Sciences,  Inc.,  filed as an exhibit to the
            annual  report on Form 10-KSB filed with the  Commission on December
            29, 2003 and incorporated herein by reference.

4.1         Form of Subscription  Agreement,  filed as an exhibit to the current
            report on Form 8-K filed with the Commission on January 28, 2005 and
            incorporated herein by reference.

4.2         Form of 10% Secured Convertible Promissory Note, filed as an exhibit
            to the  current  report on Form 8-K  filed  with the  Commission  on
            January 28, 2005 and incorporated herein by reference.

4.3         Form of Warrant Agreement, filed as an exhibit to the current report
            on Form 8-K  filed  with the  Commission  on  January  28,  2005 and
            incorporated herein by reference.

4.4         Registration  Rights Agreement,  dated January 28, 2005, between the
            Company  and  Vertical  Capital  Partners,  Inc.,  on  behalf of the
            investors,  filed as an  exhibit to the  current  report on Form 8-K
            filed with the  Commission  on  January  28,  2005 and  incorporated
            herein by reference.

4.5         Security Agreement,  dated January 28, 2005, between the Company and
            Vertical Capital Partners,  Inc., on behalf of the investors,  filed
            as an  exhibit  to the  current  report on Form 8-K  filed  with the
            Commission on January 28, 2005 and incorporated herein by reference.

10.1        Exclusive  License  Agreement  between Biowell  Technology Corp. and
            Applied DNA Sciences, Inc.  executed  on  October 8,  2002, filed as
            an  exhibit  to the registration  statement  on Form SB-2 filed with
            the  Commission on  February 15, 2005  and  incorporated  herein  by
            reference.

10.2        Sub-License Agreement with G. A. Corporate Finance Ltd.  Applied DNA
            Sciences, Inc., executed on July 29, 2003, as amended,  filed  as an
            exhibit to the current report on Form 8-K  filed with the Commission
            on September 29, 2003 and incorporated herein by reference.

10.3        Indemnification Agreement with Larry Lee, filed as an exhibit to the
            registration  statement  on Form SB-2 filed with the  Commission  on
            February 15, 2005 and incorporated herein by reference.

                                       41





10.4        Indemnification Agreement with Robin Hutchison,  filed as an exhibit
            to the registration statement on Form SB-2 filed with the Commission
            on February 15, 2005 and incorporated herein by reference.

10.5        Indemnification Agreement with Peter Brocklesby, filed as an exhibit
            to the registration statement on Form SB-2 filed with the Commission
            on February 15, 2005 and incorporated herein by reference.

10.6        Indemnification Agreement with Adrian Botash, filed as an exhibit to
            the registration statement on Form SB-2 filed with the Commission on
            February 15, 2005 and incorporated herein by reference.

10.7        Stock  Purchase  Agreement,  dated as of January  28,  2005,  by and
            between  Applied DNA Sciences,  Inc. and Biowell  Technology,  Inc.,
            filed as an exhibit to the current report on Form 8-K filed with the
            Commission on February 2, 2005 and incorporated herein by reference.

10.8        Investment Advisory Agreement, dated as of February 14, 2005, by and
            between Applied DNA Sciences,  Inc. and First London Finance,  Ltd.,
            filed as an exhibit to the registration statement on Form SB-2 filed
            with the Commission on February 15, 2005 and incorporated  herein by
            reference.

10.9        Amendment to the License Agreement, dated as of November 2, 2004, by
            and between Applied DNA Sciences,  Inc. and Biowell Technology Inc.,
            filed as an exhibit to the registration statement on Form SB-2 filed
            with the  Commission  on June 16,  2005 and  incorporated  herein by
            reference.

10.10       Joint  Product  Development  and  Marketing  Agreement,  dated as of
            November 10, 2004,  by and between  Applied DNA  Sciences,  Inc. and
            Hologrammas  S.A. de C.V.,  filed as an exhibit to the  registration
            statement on Form SB-2 filed with the Commission on October 28, 2005
            and incorporated herein by reference.

10.11       Cooperative  Research  and  Development   Agreement,   dated  as  of
            September 2, 2004,  by and between  Applied DNA  Sciences,  Inc. and
            Bechtel  BWXT Idaho,  LLC,  filed as an exhibit to the  registration
            statement on Form SB-2 filed with the Commission on October 28, 2005
            and incorporated herein by reference.

10.12       Amendment to the  Cooperative  Research and  Development  Agreement,
            dated as of March 24,  2005,  by and between  Applied DNA  Sciences,
            Inc. and Battelle Energy  Alliance,  LLC, filed as an exhibit to the
            current report on Form 8-K filed with the Commission on May 10, 2005
            and incorporated herein by reference.

10.13       Stock Purchase  Amendment  Agreement,  dated as of July 12, 2005, by
            and between Applied DNA Sciences, Inc. and Biowell Technology, Inc.,
            filed as an exhibit to the current report on Form 8-K filed with the
            Commission on July 21, 2005 and incorporated herein by reference.

10.14       License Agreement, dated as of July 12, 2005, by and between Applied
            DNA Sciences, Inc. and Biowell Technology, Inc., filed as an exhibit
            to the current  report on Form 8-K filed with the Commission on July
            21, 2005 and incorporated herein by reference.

10.15       Amendment to the License Agreement, dated as of October 10, 2005, by
            and between Applied DNA Sciences, Inc. and Biowell Technology, Inc.,
            filed as an exhibit to the registration statement on Form SB-2 filed
            with the Commission on October 28, 2005 and  incorporated  herein by
            reference.

10.16       Consulting  Agreement,  dated as of July 12,  2005,  by and  between
            Applied DNA Sciences,  Inc. and Timpix International  Limited, filed
            as an  exhibit  to the  current  report on Form 8-K  filed  with the
            Commission on July 21, 2005 and incorporated herein by reference.

                                       42





10.17       Letter of  Engagement,  dated as of June 20,  2005,  by and  between
            Applied DNA Sciences, Inc. and Trilogy Capital Partners, Inc., filed
            as an  exhibit  to the  current  report on Form 8-K  filed  with the
            Commission on July 21, 2005 and incorporated herein by reference.

31.1        Certification of Chief Executive Officer pursuant to Rule 13a-14 and
            Rule 15d-14(a), promulgated under the Securities and Exchange Act of
            1934, as amended

31.2        Certification of Chief Financial Officer pursuant to Rule 13a-14 and
            Rule 15d 14(a), promulgated under the Securities and Exchange Act of
            1934, as amended

32.1        Certification  pursuant  to  18 U.S.C.  Section   1350,  as  adopted
            pursuant to  Section 906  of the Sarbanes-Oxley  Act of  2002 (Chief
            Executive Officer)

32.2        Certification  pursuant  to  18  U.S.C.  Section  1350,  as  adopted
            pursuant  to  Section  906  of the Sarbanes-Oxley Act of 2002 (Chief
            Financial Officer)

                                       43





ITEM 14. PRINCIPAL ACCOUNTANT FEES AND SERVICES.

         The following table sets forth fees billed to us by our auditors during
the fiscal years ended  September  30, 2006 and 2005 for: (i) services  rendered
for the audit of our annual financial statements and the review of our quarterly
financial  statements,  (ii) services by our auditor that are reasonably related
to the  performance of the audit or review of our financial  statements and that
are not reported as Audit Fees,  (iii) services  rendered in connection with tax
compliance,  tax advice and tax  planning,  and (iv) all other fees for services
rendered.




                                          September 30, 2006       September 30, 2005

                                                               
(i)      Audit Fees                         $221,362                  $134,341


(ii)     Audit Related Fees                  $34,500                      -

(iii)    Tax Fees                                -                        -

(iv)     All Other Fees                          -                        -


         Total Fees                         $255,862                  $134,341



Audit Fees

       Consists  of fees billed for   professional  services   rendered  for the
audit of the  Company's  consolidated  financial  statements  and  review of the
interim  consolidated  financial  statements  included in quarterly  reports and
services that are normally provided by Russell Bedford Stefanou  Mirchandani LLP
in connection with statutory and regulatory filings or engagements.

Audit Related Fees

       Consists of fees  billed for  assurance  and  related  services  that are
reasonably  related to the  performance  of the audit or review of the Company's
consolidated financial statements and are not reported under "Audit Fees." These
services  consist of responding to SEC comments and the review of and consent to
registration statements.

Tax Fees

       Consists  of  fees billed for  professional  services for tax compliance,
tax advice and tax planning.

All Other Fees

       Consists of  fees for  products  and  services  other than  the  services
reported above. There were no management  consulting services provided in fiscal
2006 or 2005.

       The  Board  of  Directors  has  considered   whether   the  provision  of
non-audit  services is compatible with  maintaining  the principal  accountant's
independence.

Policy on Audit Committee Pre-Approval of Audit and Permissible Non-Audit
Services of Independent Auditors

       The Company  currently  does not  have a designated Audit Committee,  and
accordingly,  the Company's  Board of Directors'  policy is to  pre-approve  all
audit and permissible  non-audit services provided by the independent  auditors.
These services may include audit services,  audit-related services, tax services
and other services.  Pre-approval  is generally  provided for up to one year and
any  pre-approval  is  detailed  as to the  particular  service or  category  of
services and is generally subject to a specific budget. The independent auditors
and management  are required to  periodically  report to the Company's  Board of
Directors regarding the extent of services provided by the independent  auditors
in accordance with this pre-approval, and the fees for the services performed to
date.  The Board of  Directors  may also  pre-approve  particular  services on a
case-by-case basis.

                                       44





Signatures

       In accordance with  the requirements of  the Exchange Act, the registrant
caused this report to be signed on its behalf by the undersigned, thereunto duly
authorized.

                                              APPLIED DNA SCIENCES, INC.

      Date: January 16, 2007                   /s/JAMES A. HAYWARD
                                               -------------------
                                               James A. Hayward
                                               Chief Executive Officer
                                               (Principal Executive Officer)
                                               and Chief Financial Officer
                                               (Principal Financial Officer
                                               and Principal Accounting Officer)

       Pursuant  to the  requirements  of the  Securities  Exchange Act of 1934,
this  report has been  signed  below by the  following  persons on behalf of the
registrant and in the capacities and on the dates indicated.





Name                            Position                                                           Date

                                                                                             
/s/ JAMES A. HAYWARD            Chief Executive Officer (Principal Executive Officer) and Chief    January 16, 2007
--------------------            Financial Officer (Principal Financial Officer and Principal
                                Accounting Officer)

/s/ JUN-JEI SHEU                Chairman of the Board of Directors                                 January 16, 2007
----------------
Jun-Jei Sheu

/s/ YACOV SHAMASH               Director                                                           January 16, 2007
-----------------
Yacov Shamash

/s/ SANFORD R. SIMON            Director                                                           January 16, 2007
--------------------
Sanford R. Simon




                                       45